miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 5' -54.2 NC_003521.1 + 181369 0.68 0.967937
Target:  5'- uGGuguUGUCguagaccucgagcUCGCUGccggcggcgGCGCCGCUGUCGc -3'
miRNA:   3'- -CCu--ACAGa------------AGCGAC---------UGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 46501 0.66 0.990588
Target:  5'- cGGggGUCUUCuugggguGCUGGCACacgGgCGUCu -3'
miRNA:   3'- -CCuaCAGAAG-------CGACUGUGg--CgGCAGc -5'
14589 5' -54.2 NC_003521.1 + 77444 0.66 0.990705
Target:  5'- aGGAUGcCgcCGUuggugcccgUGACACUGCCGcCGc -3'
miRNA:   3'- -CCUACaGaaGCG---------ACUGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 78656 0.66 0.990822
Target:  5'- cGAUGUCgucgggcuucucggCGCagggGAaGCCGCCGUCu -3'
miRNA:   3'- cCUACAGaa------------GCGa---CUgUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 35513 0.67 0.979214
Target:  5'- aGGGUGUCgaggugUCGaaaCUGGucCGCCauGCCGUCGu -3'
miRNA:   3'- -CCUACAGa-----AGC---GACU--GUGG--CGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 139782 0.71 0.885047
Target:  5'- cGGAUGgguuuggcgucgcccUCggCGgUGGCgaaGCCGCCGUCGa -3'
miRNA:   3'- -CCUAC---------------AGaaGCgACUG---UGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 179975 0.7 0.9078
Target:  5'- uGGggGUCUUUGUUcAUgcucucgcggGCCGCCGUCGu -3'
miRNA:   3'- -CCuaCAGAAGCGAcUG----------UGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 193331 0.66 0.989473
Target:  5'- gGGGUGgucgcCUUCGUucccaUGuCGCCGCuCGUCu -3'
miRNA:   3'- -CCUACa----GAAGCG-----ACuGUGGCG-GCAGc -5'
14589 5' -54.2 NC_003521.1 + 140853 0.66 0.989212
Target:  5'- uGGAgcgCUUCGCggucucggccgaGGCGCCGCCGcCc -3'
miRNA:   3'- -CCUacaGAAGCGa-----------CUGUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 123501 0.66 0.988117
Target:  5'- gGGGUGUCgUCGUcGcCGCUGCCGcCc -3'
miRNA:   3'- -CCUACAGaAGCGaCuGUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 127220 0.67 0.974525
Target:  5'- ---cGUCgUCGCUGGCGCgGUgGUCc -3'
miRNA:   3'- ccuaCAGaAGCGACUGUGgCGgCAGc -5'
14589 5' -54.2 NC_003521.1 + 226370 0.67 0.974525
Target:  5'- gGGAg--CggCgGCUGACGCCGCCG-Ca -3'
miRNA:   3'- -CCUacaGaaG-CGACUGUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 223769 0.67 0.976957
Target:  5'- ---cGUCcUCGCUGuCGgCGCCGUUa -3'
miRNA:   3'- ccuaCAGaAGCGACuGUgGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 220944 0.67 0.976957
Target:  5'- aGGA--UCagCGCcGACGCgGCCGUCa -3'
miRNA:   3'- -CCUacAGaaGCGaCUGUGgCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 232392 0.67 0.979214
Target:  5'- ---cGUCUcgCGCUGGCugCGCCuG-CGg -3'
miRNA:   3'- ccuaCAGAa-GCGACUGugGCGG-CaGC- -5'
14589 5' -54.2 NC_003521.1 + 143518 0.67 0.974525
Target:  5'- uGGAUGUCgggC-CUGauccgcacgcGCGCCGCCGgCGa -3'
miRNA:   3'- -CCUACAGaa-GcGAC----------UGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 126633 0.69 0.929725
Target:  5'- uGAUGUCgUCGUUGAUGCCcgaGCCGaUCa -3'
miRNA:   3'- cCUACAGaAGCGACUGUGG---CGGC-AGc -5'
14589 5' -54.2 NC_003521.1 + 40386 0.69 0.929725
Target:  5'- cGAUGUCggCGUcgUGGCGCaccuCGCUGUCGa -3'
miRNA:   3'- cCUACAGaaGCG--ACUGUG----GCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 100690 0.69 0.929725
Target:  5'- uGAUG-CUgaugCGgaGGCGCCGCCG-CGg -3'
miRNA:   3'- cCUACaGAa---GCgaCUGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 57978 0.69 0.929725
Target:  5'- ---cGUCcUCGCUGcuguugucaGCGCCGCCGaUCGc -3'
miRNA:   3'- ccuaCAGaAGCGAC---------UGUGGCGGC-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.