Results 1 - 20 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14589 | 5' | -54.2 | NC_003521.1 | + | 211616 | 1.11 | 0.006468 |
Target: 5'- gGGAUGUCUUCGCUGACACCGCCGUCGu -3' miRNA: 3'- -CCUACAGAAGCGACUGUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 17459 | 0.76 | 0.634202 |
Target: 5'- cGAUGUCgcUGCUGACcaagGCCGCCGcCGa -3' miRNA: 3'- cCUACAGaaGCGACUG----UGGCGGCaGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 209817 | 0.75 | 0.703183 |
Target: 5'- ---cGUCcUCGCcGGCGCCGUCGUCGc -3' miRNA: 3'- ccuaCAGaAGCGaCUGUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 39006 | 0.75 | 0.712877 |
Target: 5'- uGGAUGUgg-CGCUG-CACgGCCGUCa -3' miRNA: 3'- -CCUACAgaaGCGACuGUGgCGGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 239234 | 0.75 | 0.712877 |
Target: 5'- uGGAUGUgg-CGCUG-CACgGCCGUCa -3' miRNA: 3'- -CCUACAgaaGCGACuGUGgCGGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 29237 | 0.74 | 0.732062 |
Target: 5'- aGGAcGUCUcCGggGACACCGCCG-CGa -3' miRNA: 3'- -CCUaCAGAaGCgaCUGUGGCGGCaGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 53440 | 0.73 | 0.769389 |
Target: 5'- cGGAggcUGUUgcCGCUGcuCACCGUCGUCGg -3' miRNA: 3'- -CCU---ACAGaaGCGACu-GUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 132479 | 0.73 | 0.80488 |
Target: 5'- ---cGUCUUCGgaGA--CCGCCGUCGg -3' miRNA: 3'- ccuaCAGAAGCgaCUguGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 78567 | 0.73 | 0.813404 |
Target: 5'- cGGUGUCgcaccccCGUUGACGCCcaccccgccagcGCCGUCGg -3' miRNA: 3'- cCUACAGaa-----GCGACUGUGG------------CGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 151492 | 0.72 | 0.853565 |
Target: 5'- uGGGUG-CgacaUCGCgGACggugaacuACCGCCGUCGg -3' miRNA: 3'- -CCUACaGa---AGCGaCUG--------UGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 165794 | 0.72 | 0.838021 |
Target: 5'- --------cCGCUGGCGCUGCCGUCGc -3' miRNA: 3'- ccuacagaaGCGACUGUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 23594 | 0.72 | 0.845106 |
Target: 5'- gGGGUGcuggccugcauccUCUUCGCgaucuGCACCGCCGUgGc -3' miRNA: 3'- -CCUAC-------------AGAAGCGac---UGUGGCGGCAgC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 24179 | 0.71 | 0.889033 |
Target: 5'- cGGA-GUCUUCGCUuuC-CCGgCGUCGg -3' miRNA: 3'- -CCUaCAGAAGCGAcuGuGGCgGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 44123 | 0.71 | 0.861057 |
Target: 5'- uGAaGUCggccgUCGCUgcuccuccuccGACGCCGUCGUCGa -3' miRNA: 3'- cCUaCAGa----AGCGA-----------CUGUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 166121 | 0.71 | 0.868355 |
Target: 5'- gGGAgccgCUgcCGC-GGCGCCGCCGUCGc -3' miRNA: 3'- -CCUaca-GAa-GCGaCUGUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 139782 | 0.71 | 0.885047 |
Target: 5'- cGGAUGgguuuggcgucgcccUCggCGgUGGCgaaGCCGCCGUCGa -3' miRNA: 3'- -CCUAC---------------AGaaGCgACUG---UGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 233133 | 0.7 | 0.915881 |
Target: 5'- -aGUGUCUUCGCcaccgacaacucugcUugGGCACCGCUGUCc -3' miRNA: 3'- ccUACAGAAGCG---------------A--CUGUGGCGGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 179975 | 0.7 | 0.9078 |
Target: 5'- uGGggGUCUUUGUUcAUgcucucgcggGCCGCCGUCGu -3' miRNA: 3'- -CCuaCAGAAGCGAcUG----------UGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 127044 | 0.7 | 0.92458 |
Target: 5'- ---cGUCg-CGCUGGCcgucGCCGUCGUCGa -3' miRNA: 3'- ccuaCAGaaGCGACUG----UGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 117217 | 0.7 | 0.92458 |
Target: 5'- aGAUGUCgcaccCGCUGACGgCCGCgG-CGg -3' miRNA: 3'- cCUACAGaa---GCGACUGU-GGCGgCaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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