miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14591 3' -59.5 NC_003521.1 + 239762 0.67 0.843848
Target:  5'- gCGagAGCU-GGCgCAGGUCgGUGGCCc -3'
miRNA:   3'- gGUagUUGGuCCG-GUCCGGgCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 239639 0.71 0.622134
Target:  5'- cCUGUUGGCaCAGGCCGuccagucccguaggcGGCgCCGUGGCUc -3'
miRNA:   3'- -GGUAGUUG-GUCCGGU---------------CCG-GGCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 239252 0.67 0.820258
Target:  5'- gCCGUCAGCagcgacggCGGGUguGGCgCCGaGGCg -3'
miRNA:   3'- -GGUAGUUG--------GUCCGguCCG-GGCaCCGg -5'
14591 3' -59.5 NC_003521.1 + 235082 0.66 0.879668
Target:  5'- cUCGUCAugACCAugacacGcGCCGuGCCCG-GGCCg -3'
miRNA:   3'- -GGUAGU--UGGU------C-CGGUcCGGGCaCCGG- -5'
14591 3' -59.5 NC_003521.1 + 234803 0.68 0.769159
Target:  5'- cUCGUCGggcuCCucGGCCucgucgucgGGGUUCGUGGCCg -3'
miRNA:   3'- -GGUAGUu---GGu-CCGG---------UCCGGGCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 234657 0.67 0.820258
Target:  5'- cCCAaCAGCCAGgaGCCGGaGCCgGcgcauUGGCUg -3'
miRNA:   3'- -GGUaGUUGGUC--CGGUC-CGGgC-----ACCGG- -5'
14591 3' -59.5 NC_003521.1 + 229068 0.72 0.531547
Target:  5'- gCCGUCc-CCAGGgcgagUCGGGCCCGUcgaugacGGCCg -3'
miRNA:   3'- -GGUAGuuGGUCC-----GGUCCGGGCA-------CCGG- -5'
14591 3' -59.5 NC_003521.1 + 227913 0.7 0.647248
Target:  5'- uCCcgCcACCAGcGCCAGGCuguCUGUGGUa -3'
miRNA:   3'- -GGuaGuUGGUC-CGGUCCG---GGCACCGg -5'
14591 3' -59.5 NC_003521.1 + 226080 0.66 0.851376
Target:  5'- ---cCGGCCGcGGCC-GGCCCGUcacGCCc -3'
miRNA:   3'- gguaGUUGGU-CCGGuCCGGGCAc--CGG- -5'
14591 3' -59.5 NC_003521.1 + 224603 0.68 0.777991
Target:  5'- gCAcUCGGCCAGGCggcaGGGCgCCGccaccucgaagGGCCa -3'
miRNA:   3'- gGU-AGUUGGUCCGg---UCCG-GGCa----------CCGG- -5'
14591 3' -59.5 NC_003521.1 + 224122 0.71 0.598988
Target:  5'- cUCGUCGAcgauguCCAGGCCGuGGgCCGagucgGGCCa -3'
miRNA:   3'- -GGUAGUU------GGUCCGGU-CCgGGCa----CCGG- -5'
14591 3' -59.5 NC_003521.1 + 224026 0.67 0.820258
Target:  5'- cCCggCggUCGGGgCGGGCgCCGUcGCCc -3'
miRNA:   3'- -GGuaGuuGGUCCgGUCCG-GGCAcCGG- -5'
14591 3' -59.5 NC_003521.1 + 223310 0.7 0.637591
Target:  5'- uCCcgCGccGCCGGGCCGGGaaccgCCGUGaCCg -3'
miRNA:   3'- -GGuaGU--UGGUCCGGUCCg----GGCACcGG- -5'
14591 3' -59.5 NC_003521.1 + 223137 0.69 0.70472
Target:  5'- aCCAggAGCCAguuGGCCGGGUuacgcagggccaCCGUGGUg -3'
miRNA:   3'- -GGUagUUGGU---CCGGUCCG------------GGCACCGg -5'
14591 3' -59.5 NC_003521.1 + 223058 0.68 0.77799
Target:  5'- aCCGUCcGCCGccggcgguacGGCCAGuucCCCGgccucGGCCg -3'
miRNA:   3'- -GGUAGuUGGU----------CCGGUCc--GGGCa----CCGG- -5'
14591 3' -59.5 NC_003521.1 + 222168 0.66 0.886261
Target:  5'- cCCcgUGGCCAG--CAGGUCCGUgcGGCCc -3'
miRNA:   3'- -GGuaGUUGGUCcgGUCCGGGCA--CCGG- -5'
14591 3' -59.5 NC_003521.1 + 220125 0.78 0.263939
Target:  5'- gCGUCcGCCcagaaAGGCCAGGCCCGUGaaggugaugaacagcGCCa -3'
miRNA:   3'- gGUAGuUGG-----UCCGGUCCGGGCAC---------------CGG- -5'
14591 3' -59.5 NC_003521.1 + 219242 0.69 0.72352
Target:  5'- cCCAggUCAgcagcGCCGGGUagagcaGGGCCCGcaggGGCUg -3'
miRNA:   3'- -GGU--AGU-----UGGUCCGg-----UCCGGGCa---CCGG- -5'
14591 3' -59.5 NC_003521.1 + 218352 0.74 0.451332
Target:  5'- uUCAUC-ACCAGG-CAGGCCacCGUGaGCCa -3'
miRNA:   3'- -GGUAGuUGGUCCgGUCCGG--GCAC-CGG- -5'
14591 3' -59.5 NC_003521.1 + 218215 0.66 0.872878
Target:  5'- cCCGggCAACgGaGGUCAGGCgaCCGcaggGGCCg -3'
miRNA:   3'- -GGUa-GUUGgU-CCGGUCCG--GGCa---CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.