miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14591 3' -59.5 NC_003521.1 + 135012 0.78 0.255751
Target:  5'- aCCAUCuGGCU--GCCGGGCaCCGUGGCCu -3'
miRNA:   3'- -GGUAG-UUGGucCGGUCCG-GGCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 184333 0.72 0.555044
Target:  5'- gCCGUCAGCCGcaguacugccucuucGGgCGGGCC-GUGGCg -3'
miRNA:   3'- -GGUAGUUGGU---------------CCgGUCCGGgCACCGg -5'
14591 3' -59.5 NC_003521.1 + 90086 0.72 0.56073
Target:  5'- uCCGggCAGCCGGcCCAGGa-CGUGGCCc -3'
miRNA:   3'- -GGUa-GUUGGUCcGGUCCggGCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 213430 0.66 0.886261
Target:  5'- aCAaCAACCAcgagauccccguGGCCuGGCCCcccGGCUg -3'
miRNA:   3'- gGUaGUUGGU------------CCGGuCCGGGca-CCGG- -5'
14591 3' -59.5 NC_003521.1 + 139199 0.76 0.347302
Target:  5'- aCGcgCuACCAGcGCCGGGCCC-UGGCCg -3'
miRNA:   3'- gGUa-GuUGGUC-CGGUCCGGGcACCGG- -5'
14591 3' -59.5 NC_003521.1 + 28314 0.76 0.362149
Target:  5'- cUCAUCAuCCAGGCCuacguGGUCuCGUcGGCCa -3'
miRNA:   3'- -GGUAGUuGGUCCGGu----CCGG-GCA-CCGG- -5'
14591 3' -59.5 NC_003521.1 + 152728 0.75 0.369736
Target:  5'- uCCAUgAACUucGCCGaguGGCCCGUGGUCa -3'
miRNA:   3'- -GGUAgUUGGucCGGU---CCGGGCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 217841 0.74 0.416659
Target:  5'- aCCGUCAACCAGGCgCAGaGCCCcagcagcacgacGUGcacccgaGCCa -3'
miRNA:   3'- -GGUAGUUGGUCCG-GUC-CGGG------------CAC-------CGG- -5'
14591 3' -59.5 NC_003521.1 + 91942 0.73 0.513933
Target:  5'- gCGUCGGCCAcGGCCgAGGCCa--GGCUg -3'
miRNA:   3'- gGUAGUUGGU-CCGG-UCCGGgcaCCGG- -5'
14591 3' -59.5 NC_003521.1 + 121093 0.72 0.551263
Target:  5'- uUCAUCuuCCGGGCCGGGgccauCCCGcugaGGCUg -3'
miRNA:   3'- -GGUAGuuGGUCCGGUCC-----GGGCa---CCGG- -5'
14591 3' -59.5 NC_003521.1 + 131215 0.72 0.523175
Target:  5'- aUCAUCGAgaCGGGCCuGuGCUCGcUGGCCg -3'
miRNA:   3'- -GGUAGUUg-GUCCGGuC-CGGGC-ACCGG- -5'
14591 3' -59.5 NC_003521.1 + 157272 0.74 0.442728
Target:  5'- aCGUCAACCuGGUgGGcCCCGUGuGCCu -3'
miRNA:   3'- gGUAGUUGGuCCGgUCcGGGCAC-CGG- -5'
14591 3' -59.5 NC_003521.1 + 162944 0.77 0.285338
Target:  5'- aCCAUCAACUuccacuacgAGGCCGGcgccaucGCCCGUcuGGCCa -3'
miRNA:   3'- -GGUAGUUGG---------UCCGGUC-------CGGGCA--CCGG- -5'
14591 3' -59.5 NC_003521.1 + 110895 0.72 0.53248
Target:  5'- gCCGucUCGGCCAGGUguucgcgcagCAGGCgCGcGGCCg -3'
miRNA:   3'- -GGU--AGUUGGUCCG----------GUCCGgGCaCCGG- -5'
14591 3' -59.5 NC_003521.1 + 98420 0.77 0.305415
Target:  5'- aCGUUGGCCAgggcGGCCAGGgCCGcGGCCu -3'
miRNA:   3'- gGUAGUUGGU----CCGGUCCgGGCaCCGG- -5'
14591 3' -59.5 NC_003521.1 + 44866 0.74 0.425803
Target:  5'- ---aCAACCGcuGCCAGaGCCUGUGGCCc -3'
miRNA:   3'- gguaGUUGGUc-CGGUC-CGGGCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 102113 0.72 0.551263
Target:  5'- aCCAcCAGCCAGGCgcccgugccgccCAGGCUCacGGCCu -3'
miRNA:   3'- -GGUaGUUGGUCCG------------GUCCGGGcaCCGG- -5'
14591 3' -59.5 NC_003521.1 + 196966 0.72 0.557885
Target:  5'- cCCGggAGCC-GGCCggggcgccugugacGGGCCCGcGGCCg -3'
miRNA:   3'- -GGUagUUGGuCCGG--------------UCCGGGCaCCGG- -5'
14591 3' -59.5 NC_003521.1 + 70977 0.76 0.332897
Target:  5'- aCAcCGGCCAGGCCcuGUCCGUGGUg -3'
miRNA:   3'- gGUaGUUGGUCCGGucCGGGCACCGg -5'
14591 3' -59.5 NC_003521.1 + 195513 0.76 0.362149
Target:  5'- gCCGUCGGCCAGcUCGGGCuCCGgcuccUGGCCc -3'
miRNA:   3'- -GGUAGUUGGUCcGGUCCG-GGC-----ACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.