miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14591 5' -58.9 NC_003521.1 + 113391 0.79 0.233371
Target:  5'- cUGGCCGACGAG-CCGCuGgcGGCCUa -3'
miRNA:   3'- uACCGGCUGCUCuGGUG-CauCCGGAc -5'
14591 5' -58.9 NC_003521.1 + 155400 0.7 0.664523
Target:  5'- -aGGCCGGCgGGGGgCugGgcaccggAGGCCUGc -3'
miRNA:   3'- uaCCGGCUG-CUCUgGugCa------UCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 979 0.69 0.703335
Target:  5'- -aGGCCGGCGGucugcuCC-CGUGGGCCg- -3'
miRNA:   3'- uaCCGGCUGCUcu----GGuGCAUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 170841 0.66 0.887508
Target:  5'- --uGCaCGACGAGACgCGCGUcGGCUUc -3'
miRNA:   3'- uacCG-GCUGCUCUG-GUGCAuCCGGAc -5'
14591 5' -58.9 NC_003521.1 + 7383 0.74 0.429214
Target:  5'- uUGGCCaGAaGGGACCGCGUcgAGGCCg- -3'
miRNA:   3'- uACCGG-CUgCUCUGGUGCA--UCCGGac -5'
14591 5' -58.9 NC_003521.1 + 137541 0.74 0.464129
Target:  5'- gGUGGCCuacGACGAGACgGCGccGGCCg- -3'
miRNA:   3'- -UACCGG---CUGCUCUGgUGCauCCGGac -5'
14591 5' -58.9 NC_003521.1 + 84881 0.73 0.519109
Target:  5'- cAUGGCCGAgaagagcagaccCGAGACCagcgaguagGCGUAgccGGCCUGc -3'
miRNA:   3'- -UACCGGCU------------GCUCUGG---------UGCAU---CCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 131325 0.72 0.52853
Target:  5'- -cGGCCGGCGcGACCACucgcuggAGcGCCUGg -3'
miRNA:   3'- uaCCGGCUGCuCUGGUGca-----UC-CGGAC- -5'
14591 5' -58.9 NC_003521.1 + 18763 0.72 0.557151
Target:  5'- -aGGacaaCGACGAGACCACGcAGGCg-- -3'
miRNA:   3'- uaCCg---GCUGCUCUGGUGCaUCCGgac -5'
14591 5' -58.9 NC_003521.1 + 35800 0.7 0.664523
Target:  5'- -aGGCCGACuacGGCgGCGUGGGCgaGa -3'
miRNA:   3'- uaCCGGCUGcu-CUGgUGCAUCCGgaC- -5'
14591 5' -58.9 NC_003521.1 + 19456 0.71 0.59595
Target:  5'- -aGGCgCGGCGGGACCAUGUcgcugcgcGGCCa- -3'
miRNA:   3'- uaCCG-GCUGCUCUGGUGCAu-------CCGGac -5'
14591 5' -58.9 NC_003521.1 + 161478 0.72 0.547556
Target:  5'- cUGGCCGuguccuuugcGCGAGAcCCugGUGGGUCg- -3'
miRNA:   3'- uACCGGC----------UGCUCU-GGugCAUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 183686 0.78 0.26792
Target:  5'- cGUGGCCGACGAGACCuaucgcuuCGUGGaGCUg- -3'
miRNA:   3'- -UACCGGCUGCUCUGGu-------GCAUC-CGGac -5'
14591 5' -58.9 NC_003521.1 + 158131 0.71 0.59595
Target:  5'- uUGGCCcGCaucGACCAUGUGGGCCa- -3'
miRNA:   3'- uACCGGcUGcu-CUGGUGCAUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 206661 0.77 0.31955
Target:  5'- uUGGCCcGCGAccucaaggccuucGugCGCGUGGGCCUGg -3'
miRNA:   3'- uACCGGcUGCU-------------CugGUGCAUCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 207672 0.72 0.538015
Target:  5'- -aGGCCGACGAGGCCAac--GGCUUc -3'
miRNA:   3'- uaCCGGCUGCUCUGGUgcauCCGGAc -5'
14591 5' -58.9 NC_003521.1 + 87768 0.7 0.644943
Target:  5'- -cGGCgGAgGAGGCCugG-GGGCCg- -3'
miRNA:   3'- uaCCGgCUgCUCUGGugCaUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 29897 0.69 0.703335
Target:  5'- cUGGgCGACGAcGACCGacgacccguggcCGUcaaGGGCCUGg -3'
miRNA:   3'- uACCgGCUGCU-CUGGU------------GCA---UCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 109362 0.75 0.372025
Target:  5'- -aGGCCGACGAGGCCgagaGCGc-GGCCUu -3'
miRNA:   3'- uaCCGGCUGCUCUGG----UGCauCCGGAc -5'
14591 5' -58.9 NC_003521.1 + 53959 0.73 0.488516
Target:  5'- -gGGCCGACGAGccgugcugcacgccGCCGC-UGGGCCg- -3'
miRNA:   3'- uaCCGGCUGCUC--------------UGGUGcAUCCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.