miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14592 3' -59.5 NC_003521.1 + 239421 0.66 0.841349
Target:  5'- -cGuCGCucuUGGUCAGCGUCCGC-AGCAg -3'
miRNA:   3'- uuCuGCG---ACCAGUCGUGGGCGcUCGU- -5'
14592 3' -59.5 NC_003521.1 + 238481 0.77 0.245498
Target:  5'- gGAGACGCggcccagGGUCAGCAgCCCcaggaggccggcGCGAGCAg -3'
miRNA:   3'- -UUCUGCGa------CCAGUCGU-GGG------------CGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 238450 0.67 0.782583
Target:  5'- gGAGGCGCaGGgCGGCcUCgGCGGGCGg -3'
miRNA:   3'- -UUCUGCGaCCaGUCGuGGgCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 232397 0.69 0.649463
Target:  5'- --cGCGCUGG-CuGCGCCUGCG-GCAc -3'
miRNA:   3'- uucUGCGACCaGuCGUGGGCGCuCGU- -5'
14592 3' -59.5 NC_003521.1 + 228575 0.68 0.736698
Target:  5'- cAGACGCccuUGagguuGUCGGCguGCCCGCaGAGCAu -3'
miRNA:   3'- uUCUGCG---AC-----CAGUCG--UGGGCG-CUCGU- -5'
14592 3' -59.5 NC_003521.1 + 227647 0.67 0.791417
Target:  5'- cGGcACGcCUGGUCAGgACCCGCcuGUAc -3'
miRNA:   3'- uUC-UGC-GACCAGUCgUGGGCGcuCGU- -5'
14592 3' -59.5 NC_003521.1 + 226330 0.67 0.800116
Target:  5'- cAAGAUGUgcaUGGUgCGcGCGcCCCGCGGGUAg -3'
miRNA:   3'- -UUCUGCG---ACCA-GU-CGU-GGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 223929 0.68 0.717694
Target:  5'- gGAGGCGCggccgagggGGUCgaGGCGgCCGCGGGgAa -3'
miRNA:   3'- -UUCUGCGa--------CCAG--UCGUgGGCGCUCgU- -5'
14592 3' -59.5 NC_003521.1 + 217234 0.66 0.849093
Target:  5'- gAGGAUGCaGGcCAGCACCCcCGcGCc -3'
miRNA:   3'- -UUCUGCGaCCaGUCGUGGGcGCuCGu -5'
14592 3' -59.5 NC_003521.1 + 213953 0.72 0.513322
Target:  5'- aGAGACGCgGGUgGGCGCCgGCucGGGCc -3'
miRNA:   3'- -UUCUGCGaCCAgUCGUGGgCG--CUCGu -5'
14592 3' -59.5 NC_003521.1 + 213409 1.06 0.002946
Target:  5'- gAAGACGCUGGUCAGCACCCGCGAGCAg -3'
miRNA:   3'- -UUCUGCGACCAGUCGUGGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 211314 0.71 0.551435
Target:  5'- aGAGAuCGCgGGUCaacaGGCGguCCCGCGGGCGc -3'
miRNA:   3'- -UUCU-GCGaCCAG----UCGU--GGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 210718 0.66 0.833429
Target:  5'- -uGAgGCUGGcaaccagcccUCGGCGCugcuaCCGUGAGCGg -3'
miRNA:   3'- uuCUgCGACC----------AGUCGUG-----GGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 207807 0.71 0.541817
Target:  5'- -cGGCGCUGGUCaAGCuggccgagaGCCUGCGGGg- -3'
miRNA:   3'- uuCUGCGACCAG-UCG---------UGGGCGCUCgu -5'
14592 3' -59.5 NC_003521.1 + 206113 0.68 0.698418
Target:  5'- aGGGAgGCcGGUCAGCugCUGCGcgauGCu -3'
miRNA:   3'- -UUCUgCGaCCAGUCGugGGCGCu---CGu -5'
14592 3' -59.5 NC_003521.1 + 205680 0.66 0.825338
Target:  5'- cGGGCGCgUGG-C-GCACCCGCGcucagucgcGGCGa -3'
miRNA:   3'- uUCUGCG-ACCaGuCGUGGGCGC---------UCGU- -5'
14592 3' -59.5 NC_003521.1 + 198762 0.68 0.708086
Target:  5'- ---uCGCUGGUCGcGcCGCUCGUGGGCGa -3'
miRNA:   3'- uucuGCGACCAGU-C-GUGGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 197858 0.67 0.782583
Target:  5'- uGGGCGCcggcgGGUC-GCGCUCGCuGGGCu -3'
miRNA:   3'- uUCUGCGa----CCAGuCGUGGGCG-CUCGu -5'
14592 3' -59.5 NC_003521.1 + 192809 0.66 0.833429
Target:  5'- cGGAuCGCUGG-CAGCAgCCGCaGaAGCc -3'
miRNA:   3'- uUCU-GCGACCaGUCGUgGGCG-C-UCGu -5'
14592 3' -59.5 NC_003521.1 + 184478 0.71 0.541817
Target:  5'- gAAGGUGCUGGUguGCGCCCuGCGcGGCc -3'
miRNA:   3'- -UUCUGCGACCAguCGUGGG-CGC-UCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.