miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14592 5' -58.4 NC_003521.1 + 176168 0.66 0.927816
Target:  5'- gCCCGGUGGCaGGUgguugaugagcgagUUGAcGGCGUCGa -3'
miRNA:   3'- -GGGUCGCUGcCCGg-------------AACUuCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 164739 0.66 0.925804
Target:  5'- aCCAGCG-CGGGag--GggGGCaUCGc -3'
miRNA:   3'- gGGUCGCuGCCCggaaCuuCCGcAGC- -5'
14592 5' -58.4 NC_003521.1 + 24228 0.66 0.925804
Target:  5'- aCCAGCGGguUGGGCa--GcGGGCgGUCGg -3'
miRNA:   3'- gGGUCGCU--GCCCGgaaCuUCCG-CAGC- -5'
14592 5' -58.4 NC_003521.1 + 181332 0.66 0.925804
Target:  5'- -aCGGCuucGAUGaGCUuuUUGAAGGCGUCGa -3'
miRNA:   3'- ggGUCG---CUGCcCGG--AACUUCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 40361 0.66 0.920626
Target:  5'- -aCGGCGcugcGCaGGGCCUucuccacgaUGucGGCGUCGu -3'
miRNA:   3'- ggGUCGC----UG-CCCGGA---------ACuuCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 122689 0.66 0.920626
Target:  5'- gCCGGUGAucaUGGGCgUcucggcggggcUGGAGGCGgUCGu -3'
miRNA:   3'- gGGUCGCU---GCCCGgA-----------ACUUCCGC-AGC- -5'
14592 5' -58.4 NC_003521.1 + 209001 0.66 0.920626
Target:  5'- uUCGGCGccCGGGCCgaGAcGGCGcUCa -3'
miRNA:   3'- gGGUCGCu-GCCCGGaaCUuCCGC-AGc -5'
14592 5' -58.4 NC_003521.1 + 23101 0.66 0.920626
Target:  5'- gCCgGGCGGgGGGCCggGAcGGCa--- -3'
miRNA:   3'- -GGgUCGCUgCCCGGaaCUuCCGcagc -5'
14592 5' -58.4 NC_003521.1 + 18323 0.66 0.920096
Target:  5'- gCCCAGCGGCGuGGUgCUguUGGAccaguucGGCGUgGu -3'
miRNA:   3'- -GGGUCGCUGC-CCG-GA--ACUU-------CCGCAgC- -5'
14592 5' -58.4 NC_003521.1 + 192058 0.66 0.915234
Target:  5'- aCgCGGCGuccGCGGcGgUUUGuGAGGCGUCGg -3'
miRNA:   3'- -GgGUCGC---UGCC-CgGAAC-UUCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 34151 0.66 0.915234
Target:  5'- gCCCAcGCGcACGaaGGCCUUGAGGuCG-CGg -3'
miRNA:   3'- -GGGU-CGC-UGC--CCGGAACUUCcGCaGC- -5'
14592 5' -58.4 NC_003521.1 + 45243 0.66 0.915234
Target:  5'- gCCCGGCaGACGGGCCUgacccccAAGcGCuUCc -3'
miRNA:   3'- -GGGUCG-CUGCCCGGAac-----UUC-CGcAGc -5'
14592 5' -58.4 NC_003521.1 + 180875 0.66 0.915234
Target:  5'- uUCC-GCGcCGGGCUgUUGAucGGCGUCc -3'
miRNA:   3'- -GGGuCGCuGCCCGG-AACUu-CCGCAGc -5'
14592 5' -58.4 NC_003521.1 + 13904 0.66 0.915234
Target:  5'- gCCCGGCGcggaGgGGGCCgcGGAGGCc--- -3'
miRNA:   3'- -GGGUCGC----UgCCCGGaaCUUCCGcagc -5'
14592 5' -58.4 NC_003521.1 + 202128 0.66 0.909631
Target:  5'- aCCGG-GACGGGCUUgucuucggGGAuGGCGcCGa -3'
miRNA:   3'- gGGUCgCUGCCCGGAa-------CUU-CCGCaGC- -5'
14592 5' -58.4 NC_003521.1 + 26559 0.66 0.909631
Target:  5'- gCCAGCGACGGcGUC---AGGGCGaUUGu -3'
miRNA:   3'- gGGUCGCUGCC-CGGaacUUCCGC-AGC- -5'
14592 5' -58.4 NC_003521.1 + 196254 0.66 0.909631
Target:  5'- aCCAGaaaGuACaGGUCgUUGAGGGCGUCc -3'
miRNA:   3'- gGGUCg--C-UGcCCGG-AACUUCCGCAGc -5'
14592 5' -58.4 NC_003521.1 + 117720 0.66 0.909631
Target:  5'- gCCCGGCGAgGacGGUC-UGGAGGUGcgCGu -3'
miRNA:   3'- -GGGUCGCUgC--CCGGaACUUCCGCa-GC- -5'
14592 5' -58.4 NC_003521.1 + 18961 0.66 0.909631
Target:  5'- aCCCAGCGACaa--CgagGAGGGgGUCGa -3'
miRNA:   3'- -GGGUCGCUGcccgGaa-CUUCCgCAGC- -5'
14592 5' -58.4 NC_003521.1 + 1901 0.66 0.909631
Target:  5'- aCCGG-GACGGGCUUgucuucggGGAuGGCGcCGa -3'
miRNA:   3'- gGGUCgCUGCCCGGAa-------CUU-CCGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.