Results 1 - 20 of 441 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14593 | 3' | -58.8 | NC_003521.1 | + | 215027 | 0.83 | 0.12608 |
Target: 5'- cUGGCAGCUGAugGugGGCuGCAGCCGCGu -3' miRNA: 3'- cACCGUCGGCU--UugCCG-CGUCGGUGU- -5' |
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14593 | 3' | -58.8 | NC_003521.1 | + | 40439 | 0.75 | 0.37884 |
Target: 5'- -cGGCGGCCGGAGCcGUGCAGaaaCACGu -3' miRNA: 3'- caCCGUCGGCUUUGcCGCGUCg--GUGU- -5' |
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14593 | 3' | -58.8 | NC_003521.1 | + | 98475 | 0.75 | 0.37884 |
Target: 5'- -cGGCGGCCGcgGCGGCcGUGGCgGCGg -3' miRNA: 3'- caCCGUCGGCuuUGCCG-CGUCGgUGU- -5' |
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14593 | 3' | -58.8 | NC_003521.1 | + | 186930 | 0.66 | 0.875773 |
Target: 5'- -cGGUGGCgGggGCGGCgGCGaaCGCAa -3' miRNA: 3'- caCCGUCGgCuuUGCCG-CGUcgGUGU- -5' |
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14593 | 3' | -58.8 | NC_003521.1 | + | 167667 | 0.8 | 0.205939 |
Target: 5'- -aGGUcgcaGGCCGAGGCGGCGCcGCCGCc -3' miRNA: 3'- caCCG----UCGGCUUUGCCGCGuCGGUGu -5' |
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14593 | 3' | -58.8 | NC_003521.1 | + | 109331 | 0.79 | 0.210907 |
Target: 5'- -aGGCGGuuGAGGCGGCaGCAGCCGg- -3' miRNA: 3'- caCCGUCggCUUUGCCG-CGUCGGUgu -5' |
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14593 | 3' | -58.8 | NC_003521.1 | + | 76366 | 0.77 | 0.291768 |
Target: 5'- -cGGCAGCggCGAccguGACGGcCGCGGCCGCGg -3' miRNA: 3'- caCCGUCG--GCU----UUGCC-GCGUCGGUGU- -5' |
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14593 | 3' | -58.8 | NC_003521.1 | + | 76312 | 0.77 | 0.298387 |
Target: 5'- -cGGCAGCgGAGgugGCGGCGaCAGCUGCGg -3' miRNA: 3'- caCCGUCGgCUU---UGCCGC-GUCGGUGU- -5' |
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14593 | 3' | -58.8 | NC_003521.1 | + | 47631 | 0.76 | 0.333224 |
Target: 5'- -aGGCGGCCGuGACGGCggcucuggcgGCAGCUGCGc -3' miRNA: 3'- caCCGUCGGCuUUGCCG----------CGUCGGUGU- -5' |
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14593 | 3' | -58.8 | NC_003521.1 | + | 119911 | 0.76 | 0.355517 |
Target: 5'- -gGGCAGCCGcAAACGcaaGCAGCCGCc -3' miRNA: 3'- caCCGUCGGC-UUUGCcg-CGUCGGUGu -5' |
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14593 | 3' | -58.8 | NC_003521.1 | + | 90106 | 0.76 | 0.34054 |
Target: 5'- cGUGGCccacGGCCGAGAgccagucgccgcCGGCGCAGCaGCAg -3' miRNA: 3'- -CACCG----UCGGCUUU------------GCCGCGUCGgUGU- -5' |
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14593 | 3' | -58.8 | NC_003521.1 | + | 111238 | 0.76 | 0.326025 |
Target: 5'- cGUcGCGGCCGgcGCGGCGCGGCggaGCAg -3' miRNA: 3'- -CAcCGUCGGCuuUGCCGCGUCGg--UGU- -5' |
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14593 | 3' | -58.8 | NC_003521.1 | + | 103662 | 0.82 | 0.139335 |
Target: 5'- -cGGCGGCCGcuGCGGcCGCGGCCAUg -3' miRNA: 3'- caCCGUCGGCuuUGCC-GCGUCGGUGu -5' |
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14593 | 3' | -58.8 | NC_003521.1 | + | 138036 | 0.76 | 0.34054 |
Target: 5'- cUGGCGGCCGccGGCGccgucaucGCGCAGCCGCu -3' miRNA: 3'- cACCGUCGGCu-UUGC--------CGCGUCGGUGu -5' |
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14593 | 3' | -58.8 | NC_003521.1 | + | 114740 | 0.81 | 0.17393 |
Target: 5'- -cGGCAcGCCGuggGggUGGCGCGGCCACAg -3' miRNA: 3'- caCCGU-CGGC---UuuGCCGCGUCGGUGU- -5' |
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14593 | 3' | -58.8 | NC_003521.1 | + | 126715 | 0.76 | 0.326025 |
Target: 5'- gGUGaGCAGauCCGAGGCGGCGCGGUCGg- -3' miRNA: 3'- -CAC-CGUC--GGCUUUGCCGCGUCGGUgu -5' |
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14593 | 3' | -58.8 | NC_003521.1 | + | 110770 | 0.76 | 0.355517 |
Target: 5'- -aGGCcGCgGAGACGuGCGUGGCCACGu -3' miRNA: 3'- caCCGuCGgCUUUGC-CGCGUCGGUGU- -5' |
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14593 | 3' | -58.8 | NC_003521.1 | + | 7810 | 0.75 | 0.37884 |
Target: 5'- -cGGCAGCUG-GACGGCGUcaaGGCCAUc -3' miRNA: 3'- caCCGUCGGCuUUGCCGCG---UCGGUGu -5' |
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14593 | 3' | -58.8 | NC_003521.1 | + | 103110 | 0.8 | 0.191638 |
Target: 5'- cGUGGCAGgCGAAGagcUGGCGCAGCgCGCGg -3' miRNA: 3'- -CACCGUCgGCUUU---GCCGCGUCG-GUGU- -5' |
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14593 | 3' | -58.8 | NC_003521.1 | + | 113853 | 0.79 | 0.210907 |
Target: 5'- -gGGCGGCCGGcgacGACGGCGCGGguuCCGCGg -3' miRNA: 3'- caCCGUCGGCU----UUGCCGCGUC---GGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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