miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14594 3' -55 NC_003521.1 + 49977 0.65 0.978744
Target:  5'- gCGGCG-GGUGGgucGAgGGAGCcGgGUCGUc -3'
miRNA:   3'- -GUCGCaCCACCa--CU-UCUCG-CgUAGCG- -5'
14594 3' -55 NC_003521.1 + 157040 0.65 0.978744
Target:  5'- gGGCGcGGUcG-GAGGAGCGCGgcggggggCGCc -3'
miRNA:   3'- gUCGCaCCAcCaCUUCUCGCGUa-------GCG- -5'
14594 3' -55 NC_003521.1 + 18963 0.65 0.978744
Target:  5'- cCAGCGacaacgaggagGG-GGUcGAGGAcGCGCcgCGCg -3'
miRNA:   3'- -GUCGCa----------CCaCCA-CUUCU-CGCGuaGCG- -5'
14594 3' -55 NC_003521.1 + 117005 0.65 0.978744
Target:  5'- gCAGC-UGGUcgGcGUGAcGGAGCGCgaGUCGUa -3'
miRNA:   3'- -GUCGcACCA--C-CACU-UCUCGCG--UAGCG- -5'
14594 3' -55 NC_003521.1 + 7703 0.65 0.97852
Target:  5'- uGGCGaagacacUGGggcucuuuuugGGUGggGAGgGCggCGCg -3'
miRNA:   3'- gUCGC-------ACCa----------CCACuuCUCgCGuaGCG- -5'
14594 3' -55 NC_003521.1 + 87236 0.66 0.976427
Target:  5'- uGGCGcugcugcugcaGGUGGUGGAGcggcuguGCGCcgUGCg -3'
miRNA:   3'- gUCGCa----------CCACCACUUCu------CGCGuaGCG- -5'
14594 3' -55 NC_003521.1 + 36701 0.66 0.976427
Target:  5'- cCGGCGccUGGcccgagcaGGUGGAG-GCGCAguggCGCc -3'
miRNA:   3'- -GUCGC--ACCa-------CCACUUCuCGCGUa---GCG- -5'
14594 3' -55 NC_003521.1 + 238100 0.66 0.976427
Target:  5'- cCAGCGaGGcGGUGAc-GGCGCuccCGCa -3'
miRNA:   3'- -GUCGCaCCaCCACUucUCGCGua-GCG- -5'
14594 3' -55 NC_003521.1 + 56882 0.66 0.976427
Target:  5'- uGGCGaGGUGGaaagcGAGAGCuggcCGUCGCg -3'
miRNA:   3'- gUCGCaCCACCac---UUCUCGc---GUAGCG- -5'
14594 3' -55 NC_003521.1 + 86333 0.66 0.976427
Target:  5'- uCAGcCG-GGUGGUGAGGccGUGCAgcgaGCc -3'
miRNA:   3'- -GUC-GCaCCACCACUUCu-CGCGUag--CG- -5'
14594 3' -55 NC_003521.1 + 46390 0.66 0.973929
Target:  5'- gGGCGcggGGUGcGUGggGcGCGCGg-GCc -3'
miRNA:   3'- gUCGCa--CCAC-CACuuCuCGCGUagCG- -5'
14594 3' -55 NC_003521.1 + 19736 0.66 0.973929
Target:  5'- cCAGCGUGGcGGUGAc--G-GCGUCGg -3'
miRNA:   3'- -GUCGCACCaCCACUucuCgCGUAGCg -5'
14594 3' -55 NC_003521.1 + 164425 0.66 0.973929
Target:  5'- aAGCGcuacaucGGcaaGGUGGAGGGCGCcgCGg -3'
miRNA:   3'- gUCGCa------CCa--CCACUUCUCGCGuaGCg -5'
14594 3' -55 NC_003521.1 + 168440 0.66 0.973929
Target:  5'- gCGGCGgcgGGc-GUGAAGAGCGUgauggggCGCu -3'
miRNA:   3'- -GUCGCa--CCacCACUUCUCGCGua-----GCG- -5'
14594 3' -55 NC_003521.1 + 174224 0.66 0.971245
Target:  5'- -cGCG-GGUcGG-GcAGGGGCGCGUCGg -3'
miRNA:   3'- guCGCaCCA-CCaC-UUCUCGCGUAGCg -5'
14594 3' -55 NC_003521.1 + 101763 0.66 0.971245
Target:  5'- gCGGCGgaUGGUGGUGcAGcagguuGCGCAggucaguugggCGCg -3'
miRNA:   3'- -GUCGC--ACCACCACuUCu-----CGCGUa----------GCG- -5'
14594 3' -55 NC_003521.1 + 180217 0.66 0.971245
Target:  5'- uCGGCGuUGGUGGUGccGcGCGUGUgGg -3'
miRNA:   3'- -GUCGC-ACCACCACuuCuCGCGUAgCg -5'
14594 3' -55 NC_003521.1 + 115025 0.66 0.968367
Target:  5'- aCAGCGUGGaguUGGU--AGuGCGCuUCGa -3'
miRNA:   3'- -GUCGCACC---ACCAcuUCuCGCGuAGCg -5'
14594 3' -55 NC_003521.1 + 148632 0.66 0.968367
Target:  5'- gGGCGgGGgagGG-GAGGccAGgGCAUCGCc -3'
miRNA:   3'- gUCGCaCCa--CCaCUUC--UCgCGUAGCG- -5'
14594 3' -55 NC_003521.1 + 5462 0.66 0.968367
Target:  5'- cCAGa----UGGUGAAGAGCGCGU-GCg -3'
miRNA:   3'- -GUCgcaccACCACUUCUCGCGUAgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.