miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14594 5' -63.7 NC_003521.1 + 92509 0.66 0.689322
Target:  5'- aGCGUGCAccUGGUGCUgagcaacuuucccgaCCUGGGCUACc -3'
miRNA:   3'- -CGCGCGUccGCCACGA---------------GGGUCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 5967 0.66 0.689322
Target:  5'- aGCGUGCcguaaccgcuuccacAGGUGaacuUGCUCUC-GGCCACg -3'
miRNA:   3'- -CGCGCG---------------UCCGCc---ACGAGGGuCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 93325 0.66 0.685558
Target:  5'- -gGUGCuucgGGGCcGUGUUCCUcaucuGGGCCACc -3'
miRNA:   3'- cgCGCG----UCCGcCACGAGGG-----UCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 101969 0.66 0.685558
Target:  5'- --aCGCAGaaGGUGCagCCCAucuGGCCGCa -3'
miRNA:   3'- cgcGCGUCcgCCACGa-GGGU---CCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 185730 0.66 0.685558
Target:  5'- gGUGCGgAGGUgaucgccgagcgGGUGCgccggagcgCCUagGGGCCGCg -3'
miRNA:   3'- -CGCGCgUCCG------------CCACGa--------GGG--UCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 27422 0.66 0.685558
Target:  5'- uGCGCacGUAGGCcuccagGCagCCCAGGCCGa -3'
miRNA:   3'- -CGCG--CGUCCGcca---CGa-GGGUCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 101802 0.66 0.685558
Target:  5'- gGCGCGCAcgaagcccagggGGCGGUcGCgguaggCCUcGGgCACg -3'
miRNA:   3'- -CGCGCGU------------CCGCCA-CGa-----GGGuCCgGUG- -5'
14594 5' -63.7 NC_003521.1 + 40557 0.66 0.685558
Target:  5'- -aGCGCAGcucGCGGUaGUagCCCAG-CCACa -3'
miRNA:   3'- cgCGCGUC---CGCCA-CGa-GGGUCcGGUG- -5'
14594 5' -63.7 NC_003521.1 + 195606 0.66 0.685558
Target:  5'- gGUGCGCAGccggcccgccaGCuGGUcgcguugcugcaGCUCCgAGGCCAg -3'
miRNA:   3'- -CGCGCGUC-----------CG-CCA------------CGAGGgUCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 222007 0.66 0.685558
Target:  5'- uGCgGCGUGGGCGGgaaGCa-CUuGGCCACg -3'
miRNA:   3'- -CG-CGCGUCCGCCa--CGagGGuCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 74624 0.66 0.685558
Target:  5'- cCGCGCcaacagcgGGGUGGUGCgcgggaCCCuggAGcGCCGCu -3'
miRNA:   3'- cGCGCG--------UCCGCCACGa-----GGG---UC-CGGUG- -5'
14594 5' -63.7 NC_003521.1 + 127277 0.66 0.682731
Target:  5'- uCGCGCuGGUGGUcgUCCCGGcgcgagggaucccaGCCGCu -3'
miRNA:   3'- cGCGCGuCCGCCAcgAGGGUC--------------CGGUG- -5'
14594 5' -63.7 NC_003521.1 + 115822 0.66 0.679901
Target:  5'- -gGCGCGGGUGGcucagcaggcgcugGCUCaggCGGGCgGCg -3'
miRNA:   3'- cgCGCGUCCGCCa-------------CGAGg--GUCCGgUG- -5'
14594 5' -63.7 NC_003521.1 + 7094 0.66 0.676122
Target:  5'- cGCG-GC-GGCGGcGUccuccuUCuCCAGGCCGCu -3'
miRNA:   3'- -CGCgCGuCCGCCaCG------AG-GGUCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 85121 0.66 0.676122
Target:  5'- aGCG-GCGGGCGGcacguaGcCUCCCucGGCgGCg -3'
miRNA:   3'- -CGCgCGUCCGCCa-----C-GAGGGu-CCGgUG- -5'
14594 5' -63.7 NC_003521.1 + 147451 0.66 0.676122
Target:  5'- cGCGCGCGGaaguaGCGGaugGCgcgaCAGGCCGu -3'
miRNA:   3'- -CGCGCGUC-----CGCCa--CGagg-GUCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 238862 0.66 0.676122
Target:  5'- gGCGCGCcGGCugGGUGUcCCgCGGGUC-Cg -3'
miRNA:   3'- -CGCGCGuCCG--CCACGaGG-GUCCGGuG- -5'
14594 5' -63.7 NC_003521.1 + 137267 0.66 0.676122
Target:  5'- aGCGgGCAGaGCGGggGC-CCCAGcgaccuggaGCUGCg -3'
miRNA:   3'- -CGCgCGUC-CGCCa-CGaGGGUC---------CGGUG- -5'
14594 5' -63.7 NC_003521.1 + 148424 0.66 0.676122
Target:  5'- -gGUGCGGGCGGccgcgccggcgGCUCCagggguGGCCGg -3'
miRNA:   3'- cgCGCGUCCGCCa----------CGAGGgu----CCGGUg -5'
14594 5' -63.7 NC_003521.1 + 151053 0.66 0.676122
Target:  5'- uGCGCGCAGGacauaCUCUCGucuucGGCCGCg -3'
miRNA:   3'- -CGCGCGUCCgccacGAGGGU-----CCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.