miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14595 5' -54.3 NC_003521.1 + 240644 0.66 0.982867
Target:  5'- cGGGCGUgcaGGGAGGCCgaaGCGGCGgccggagccgUGCa -3'
miRNA:   3'- aUCUGCG---CCUUCUGG---UGCUGCa---------ACGc -5'
14595 5' -54.3 NC_003521.1 + 240141 0.69 0.932975
Target:  5'- cGGGCGCGGAAagcgcuGGCuCAUGGCGUcgGCc -3'
miRNA:   3'- aUCUGCGCCUU------CUG-GUGCUGCAa-CGc -5'
14595 5' -54.3 NC_003521.1 + 238451 0.69 0.91714
Target:  5'- gAGGCGCaGGgcGGCCuCGGCGggcgggGCGg -3'
miRNA:   3'- aUCUGCG-CCuuCUGGuGCUGCaa----CGC- -5'
14595 5' -54.3 NC_003521.1 + 238380 0.66 0.982867
Target:  5'- gGGGCGCGGGGaugaacGugCAgGGCGUcccaGCGg -3'
miRNA:   3'- aUCUGCGCCUU------CugGUgCUGCAa---CGC- -5'
14595 5' -54.3 NC_003521.1 + 236461 0.69 0.91714
Target:  5'- gGGACGCGG---GCCGCGAUGa-GCGa -3'
miRNA:   3'- aUCUGCGCCuucUGGUGCUGCaaCGC- -5'
14595 5' -54.3 NC_003521.1 + 236195 0.69 0.91714
Target:  5'- -uGGCGUGGGAG-CCACGuCGaUGCu -3'
miRNA:   3'- auCUGCGCCUUCuGGUGCuGCaACGc -5'
14595 5' -54.3 NC_003521.1 + 236139 0.8 0.409751
Target:  5'- gGGACGgGGggGACCgcGCGACGUcgccgGCGg -3'
miRNA:   3'- aUCUGCgCCuuCUGG--UGCUGCAa----CGC- -5'
14595 5' -54.3 NC_003521.1 + 226883 0.71 0.842093
Target:  5'- aGGGCagcuGCGGggGcACCACGGCGgccagcGCGg -3'
miRNA:   3'- aUCUG----CGCCuuC-UGGUGCUGCaa----CGC- -5'
14595 5' -54.3 NC_003521.1 + 226576 0.67 0.971245
Target:  5'- -cGcCGCGGAucgggcagcaGGAUCACGGCGUaGCc -3'
miRNA:   3'- auCuGCGCCU----------UCUGGUGCUGCAaCGc -5'
14595 5' -54.3 NC_003521.1 + 221007 0.66 0.982867
Target:  5'- gAGACGauaGGAGGccagaACUGCGACGgcGCu -3'
miRNA:   3'- aUCUGCg--CCUUC-----UGGUGCUGCaaCGc -5'
14595 5' -54.3 NC_003521.1 + 219726 0.74 0.716494
Target:  5'- --uGCGCGGAgGGACCGCGcCGUcGCGg -3'
miRNA:   3'- aucUGCGCCU-UCUGGUGCuGCAaCGC- -5'
14595 5' -54.3 NC_003521.1 + 218703 0.69 0.937795
Target:  5'- aAGGCG-GaGGAGACgGCGGCGgcgGCGg -3'
miRNA:   3'- aUCUGCgC-CUUCUGgUGCUGCaa-CGC- -5'
14595 5' -54.3 NC_003521.1 + 216126 0.68 0.946754
Target:  5'- -cGGCGCGG-AGGCCGCGGCa----- -3'
miRNA:   3'- auCUGCGCCuUCUGGUGCUGcaacgc -5'
14595 5' -54.3 NC_003521.1 + 216072 0.67 0.973929
Target:  5'- -cGACGaGGAAGACCGCGAaccacacggUGUUGa- -3'
miRNA:   3'- auCUGCgCCUUCUGGUGCU---------GCAACgc -5'
14595 5' -54.3 NC_003521.1 + 214683 1.07 0.009569
Target:  5'- gUAGACGCGGAAGACCACGACGUUGCGu -3'
miRNA:   3'- -AUCUGCGCCUUCUGGUGCUGCAACGC- -5'
14595 5' -54.3 NC_003521.1 + 214489 0.71 0.842093
Target:  5'- gUAGAgGCcuAAGACCAgGGCGUUGCu -3'
miRNA:   3'- -AUCUgCGccUUCUGGUgCUGCAACGc -5'
14595 5' -54.3 NC_003521.1 + 210363 0.67 0.965291
Target:  5'- -uGACGUGGGauugagcaAGGCCACuGACGggGgGg -3'
miRNA:   3'- auCUGCGCCU--------UCUGGUG-CUGCaaCgC- -5'
14595 5' -54.3 NC_003521.1 + 209572 0.69 0.91714
Target:  5'- cGGugGCGGggGuCCggggGCGcACGUaGCGg -3'
miRNA:   3'- aUCugCGCCuuCuGG----UGC-UGCAaCGC- -5'
14595 5' -54.3 NC_003521.1 + 209088 0.71 0.865059
Target:  5'- gAGGCgGCGGAGGcggugGCCGCGGCGUcccaGCa -3'
miRNA:   3'- aUCUG-CGCCUUC-----UGGUGCUGCAa---CGc -5'
14595 5' -54.3 NC_003521.1 + 207044 0.68 0.942387
Target:  5'- cGGugGCuGGGccgcAGGCCGgaGGCGUUGCa -3'
miRNA:   3'- aUCugCG-CCU----UCUGGUg-CUGCAACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.