miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14596 3' -56.5 NC_003521.1 + 123280 0.79 0.343135
Target:  5'- gCUCcgaaGUGACGUGCCGCCAG-GUCGUCg -3'
miRNA:   3'- aGAG----CAUUGCGUGGCGGUCuCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 98969 0.7 0.800935
Target:  5'- gCUgGUGAgGCGgUGCCgGGAGCCGUa -3'
miRNA:   3'- aGAgCAUUgCGUgGCGG-UCUCGGCAg -5'
14596 3' -56.5 NC_003521.1 + 139194 0.69 0.834301
Target:  5'- --aCGUGACGCGCUaCCAGcGCCGg- -3'
miRNA:   3'- agaGCAUUGCGUGGcGGUCuCGGCag -5'
14596 3' -56.5 NC_003521.1 + 213723 0.66 0.957713
Target:  5'- --cCGgccuGCGCGCCGUCgAGAGCCu-- -3'
miRNA:   3'- agaGCau--UGCGUGGCGG-UCUCGGcag -5'
14596 3' -56.5 NC_003521.1 + 172395 0.74 0.570916
Target:  5'- -gUUGaGGgGCGCCGgCGGAGCCGUCg -3'
miRNA:   3'- agAGCaUUgCGUGGCgGUCUCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 177576 0.74 0.579726
Target:  5'- aCUCGUcaaagguGGCgGCGCCGCCGGuuccGGCCGUUc -3'
miRNA:   3'- aGAGCA-------UUG-CGUGGCGGUC----UCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 211973 0.73 0.649841
Target:  5'- --cCGUGcCGCGCCGCCGcAGCuCGUCg -3'
miRNA:   3'- agaGCAUuGCGUGGCGGUcUCG-GCAG- -5'
14596 3' -56.5 NC_003521.1 + 20749 0.72 0.70866
Target:  5'- gCUgCGUGuACGCGCUGCUGGuGCUGUCc -3'
miRNA:   3'- aGA-GCAU-UGCGUGGCGGUCuCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 234736 0.71 0.756077
Target:  5'- --cCGUGGCGgaaCGCCGCCGcaccGGCCGUCg -3'
miRNA:   3'- agaGCAUUGC---GUGGCGGUc---UCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 5864 0.7 0.800935
Target:  5'- cCUCGU--UGguCCGCaggcuGGAGCCGUCg -3'
miRNA:   3'- aGAGCAuuGCguGGCGg----UCUCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 223335 0.7 0.783365
Target:  5'- --cCGUGACcggcgGCGCCGCUaccGGuGCCGUCg -3'
miRNA:   3'- agaGCAUUG-----CGUGGCGG---UCuCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 123932 0.71 0.727867
Target:  5'- gUCUCccgccGGCGCGCCGCCGcAGCCG-Cg -3'
miRNA:   3'- -AGAGca---UUGCGUGGCGGUcUCGGCaG- -5'
14596 3' -56.5 NC_003521.1 + 13707 0.78 0.397941
Target:  5'- cUUUCG-AGCGCugCGCCAGGGCUGg- -3'
miRNA:   3'- -AGAGCaUUGCGugGCGGUCUCGGCag -5'
14596 3' -56.5 NC_003521.1 + 117484 0.7 0.792217
Target:  5'- --aCGgc-CGCGgCGCUGGGGCCGUCg -3'
miRNA:   3'- agaGCauuGCGUgGCGGUCUCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 148946 0.77 0.43168
Target:  5'- gUC-CGUGGuCGCACCGCCGccGCCGUCc -3'
miRNA:   3'- -AGaGCAUU-GCGUGGCGGUcuCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 127708 0.72 0.718298
Target:  5'- -aUCGUcGCGCACCugGCCcgAGAGCCGcUCc -3'
miRNA:   3'- agAGCAuUGCGUGG--CGG--UCUCGGC-AG- -5'
14596 3' -56.5 NC_003521.1 + 138003 0.7 0.792217
Target:  5'- uUCUCGcAGCGCcgcuacuugcuGCCGCCcGAGCUGg- -3'
miRNA:   3'- -AGAGCaUUGCG-----------UGGCGGuCUCGGCag -5'
14596 3' -56.5 NC_003521.1 + 119203 0.7 0.800935
Target:  5'- --aCGUGGCGCugCGCCAG-GUgGUg -3'
miRNA:   3'- agaGCAUUGCGugGCGGUCuCGgCAg -5'
14596 3' -56.5 NC_003521.1 + 47987 0.74 0.561167
Target:  5'- uUCUCGUccacgGACGCGCCGCCGGGcuucugcggcuGCUGcCa -3'
miRNA:   3'- -AGAGCA-----UUGCGUGGCGGUCU-----------CGGCaG- -5'
14596 3' -56.5 NC_003521.1 + 104002 0.74 0.580706
Target:  5'- --gCGUAguacAUGCGCaCGCCGGGGUCGUCg -3'
miRNA:   3'- agaGCAU----UGCGUG-GCGGUCUCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.