miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14596 5' -57 NC_003521.1 + 44975 0.66 0.947992
Target:  5'- gGCGACAGcGCUgacgccagAGGCGGG-GAgggAGGa -3'
miRNA:   3'- -CGCUGUCcCGG--------UCCGUCCgCUaa-UCC- -5'
14596 5' -57 NC_003521.1 + 174222 0.66 0.947992
Target:  5'- cGCG-C-GGGUCGGGCagGGGCGcgUcGGa -3'
miRNA:   3'- -CGCuGuCCCGGUCCG--UCCGCuaAuCC- -5'
14596 5' -57 NC_003521.1 + 195354 0.66 0.947992
Target:  5'- -gGugGuGGGCCGGGUgaAGGUGAcgcccgAGGa -3'
miRNA:   3'- cgCugU-CCCGGUCCG--UCCGCUaa----UCC- -5'
14596 5' -57 NC_003521.1 + 145855 0.66 0.947991
Target:  5'- cGCGuCucuGGGCCcggcGGCGGGCGGc---- -3'
miRNA:   3'- -CGCuGu--CCCGGu---CCGUCCGCUaaucc -5'
14596 5' -57 NC_003521.1 + 84618 0.66 0.947579
Target:  5'- gGUGACGGccaggucguccucGGCCAuGCAGGgGAUgucgUGGGu -3'
miRNA:   3'- -CGCUGUC-------------CCGGUcCGUCCgCUA----AUCC- -5'
14596 5' -57 NC_003521.1 + 102336 0.66 0.943772
Target:  5'- cGCGugGGcgccgacGCCGGGguGGCGGc-AGGc -3'
miRNA:   3'- -CGCugUCc------CGGUCCguCCGCUaaUCC- -5'
14596 5' -57 NC_003521.1 + 87773 0.66 0.943772
Target:  5'- gGCGcaggcCAGGGCCAGGUgcugAGGCccgUAGc -3'
miRNA:   3'- -CGCu----GUCCCGGUCCG----UCCGcuaAUCc -5'
14596 5' -57 NC_003521.1 + 87870 0.66 0.943772
Target:  5'- cGCaGGCGcuGGCCAGGCcguuGGCGAaguGGa -3'
miRNA:   3'- -CG-CUGUc-CCGGUCCGu---CCGCUaauCC- -5'
14596 5' -57 NC_003521.1 + 98430 0.66 0.943772
Target:  5'- gGUGGCGGGG-CGGGCGuacGGUGAgacgacgcagAGGa -3'
miRNA:   3'- -CGCUGUCCCgGUCCGU---CCGCUaa--------UCC- -5'
14596 5' -57 NC_003521.1 + 119036 0.66 0.943772
Target:  5'- -gGAUAGGG-CGGGC-GGCGucgGGGu -3'
miRNA:   3'- cgCUGUCCCgGUCCGuCCGCuaaUCC- -5'
14596 5' -57 NC_003521.1 + 119903 0.66 0.943772
Target:  5'- cGCGGguGGGCCuGGaaCAGGUGGa---- -3'
miRNA:   3'- -CGCUguCCCGGuCC--GUCCGCUaaucc -5'
14596 5' -57 NC_003521.1 + 171436 0.66 0.943772
Target:  5'- uGCGAUugAGGaG-CAGGgGGGUGAcUAGGg -3'
miRNA:   3'- -CGCUG--UCC-CgGUCCgUCCGCUaAUCC- -5'
14596 5' -57 NC_003521.1 + 224148 0.66 0.943772
Target:  5'- cCGAgucGGGCCAGGuCAGGagGAgcggUGGGa -3'
miRNA:   3'- cGCUgu-CCCGGUCC-GUCCg-CUa---AUCC- -5'
14596 5' -57 NC_003521.1 + 186612 0.66 0.943772
Target:  5'- uCGACaAGGGCUAcgcGGC-GGCGGUgguGGc -3'
miRNA:   3'- cGCUG-UCCCGGU---CCGuCCGCUAau-CC- -5'
14596 5' -57 NC_003521.1 + 106105 0.66 0.943772
Target:  5'- -aGGCcucGGGCaCGGGCGuGGCGGccgUGGGc -3'
miRNA:   3'- cgCUGu--CCCG-GUCCGU-CCGCUa--AUCC- -5'
14596 5' -57 NC_003521.1 + 209554 0.66 0.943772
Target:  5'- cCGGCGGGGUgGcGGCGacGGUGGcgGGGg -3'
miRNA:   3'- cGCUGUCCCGgU-CCGU--CCGCUaaUCC- -5'
14596 5' -57 NC_003521.1 + 101726 0.66 0.942463
Target:  5'- cGCGGCGGGGgCGagauggggaaggccGGCAGGUcGUgcGGc -3'
miRNA:   3'- -CGCUGUCCCgGU--------------CCGUCCGcUAauCC- -5'
14596 5' -57 NC_003521.1 + 46407 0.66 0.939335
Target:  5'- gGCG-CGcGGGCCAGGaagcGGCGAc-GGGc -3'
miRNA:   3'- -CGCuGU-CCCGGUCCgu--CCGCUaaUCC- -5'
14596 5' -57 NC_003521.1 + 98529 0.66 0.939335
Target:  5'- cGCGGCuGGGCCGcuGCAgcGGCGGc-GGGu -3'
miRNA:   3'- -CGCUGuCCCGGUc-CGU--CCGCUaaUCC- -5'
14596 5' -57 NC_003521.1 + 34396 0.66 0.939334
Target:  5'- gGUGGCGcucGGGCCAGGUgaggaucagcuGGGCGucgcGGu -3'
miRNA:   3'- -CGCUGU---CCCGGUCCG-----------UCCGCuaauCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.