miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14596 5' -57 NC_003521.1 + 239261 0.67 0.919386
Target:  5'- aGCGACGgcGGGUguGGCgccgAGGCGAa---- -3'
miRNA:   3'- -CGCUGU--CCCGguCCG----UCCGCUaaucc -5'
14596 5' -57 NC_003521.1 + 238453 0.71 0.743665
Target:  5'- gGCG-CAGGGCgGccucGGCGGGCGGggcGGa -3'
miRNA:   3'- -CGCuGUCCCGgU----CCGUCCGCUaauCC- -5'
14596 5' -57 NC_003521.1 + 236490 0.66 0.929802
Target:  5'- gGCGGCGguGGcGCCAGGCAuGGaCGGUcgAGc -3'
miRNA:   3'- -CGCUGU--CC-CGGUCCGU-CC-GCUAa-UCc -5'
14596 5' -57 NC_003521.1 + 233430 0.67 0.89466
Target:  5'- uGCGugGGuuuguGGCCGGGCAgGGCGuaacguacccAGGa -3'
miRNA:   3'- -CGCugUC-----CCGGUCCGU-CCGCuaa-------UCC- -5'
14596 5' -57 NC_003521.1 + 229157 0.67 0.924704
Target:  5'- gGCG-CGGGGaUAGGCAGGCuGAUg--- -3'
miRNA:   3'- -CGCuGUCCCgGUCCGUCCG-CUAaucc -5'
14596 5' -57 NC_003521.1 + 224148 0.66 0.943772
Target:  5'- cCGAgucGGGCCAGGuCAGGagGAgcggUGGGa -3'
miRNA:   3'- cGCUgu-CCCGGUCC-GUCCg-CUa---AUCC- -5'
14596 5' -57 NC_003521.1 + 224011 0.72 0.666824
Target:  5'- uGCGGCAGcGG-CGGGCccGGCGGUcGGGg -3'
miRNA:   3'- -CGCUGUC-CCgGUCCGu-CCGCUAaUCC- -5'
14596 5' -57 NC_003521.1 + 222623 0.68 0.852187
Target:  5'- cGCGGCcgacaugugaucgaAGGGCC-GGCAGGCGc----- -3'
miRNA:   3'- -CGCUG--------------UCCCGGuCCGUCCGCuaaucc -5'
14596 5' -57 NC_003521.1 + 221898 0.68 0.852187
Target:  5'- gGCgGACGugaaucgaaaccucGGGCCAGGCGuGCGA--GGGg -3'
miRNA:   3'- -CG-CUGU--------------CCCGGUCCGUcCGCUaaUCC- -5'
14596 5' -57 NC_003521.1 + 218713 0.67 0.902114
Target:  5'- -aGACGGcGGCgGcGGCGGGCGAgaAGcGg -3'
miRNA:   3'- cgCUGUC-CCGgU-CCGUCCGCUaaUC-C- -5'
14596 5' -57 NC_003521.1 + 216886 0.68 0.88952
Target:  5'- cCGAUgAGGGUCGucGCAGGUGAggAGGg -3'
miRNA:   3'- cGCUG-UCCCGGUc-CGUCCGCUaaUCC- -5'
14596 5' -57 NC_003521.1 + 215048 1.12 0.002404
Target:  5'- uGCGACAGGGCCAGGCAGGCGAUUAGGa -3'
miRNA:   3'- -CGCUGUCCCGGUCCGUCCGCUAAUCC- -5'
14596 5' -57 NC_003521.1 + 214979 0.66 0.934678
Target:  5'- uUGGCGGcGGCCAGGgGGGUGcg-AGc -3'
miRNA:   3'- cGCUGUC-CCGGUCCgUCCGCuaaUCc -5'
14596 5' -57 NC_003521.1 + 214810 0.67 0.895924
Target:  5'- cCGuCGGGcGCCGGGCGcGGCGAcgGcGGu -3'
miRNA:   3'- cGCuGUCC-CGGUCCGU-CCGCUaaU-CC- -5'
14596 5' -57 NC_003521.1 + 214019 0.67 0.895924
Target:  5'- aCGACGGcGCuCAGGguGGCG-UUAGa -3'
miRNA:   3'- cGCUGUCcCG-GUCCguCCGCuAAUCc -5'
14596 5' -57 NC_003521.1 + 212607 0.67 0.902115
Target:  5'- aGCGAgGGGaaGCUGGGCGGuuGCGAUaccuUGGGc -3'
miRNA:   3'- -CGCUgUCC--CGGUCCGUC--CGCUA----AUCC- -5'
14596 5' -57 NC_003521.1 + 211458 0.67 0.924704
Target:  5'- cGCGGuCGGGG-CAGGCcaugAGGCGc--AGGg -3'
miRNA:   3'- -CGCU-GUCCCgGUCCG----UCCGCuaaUCC- -5'
14596 5' -57 NC_003521.1 + 209554 0.66 0.943772
Target:  5'- cCGGCGGGGUgGcGGCGacGGUGGcgGGGg -3'
miRNA:   3'- cGCUGUCCCGgU-CCGU--CCGCUaaUCC- -5'
14596 5' -57 NC_003521.1 + 207045 0.69 0.823016
Target:  5'- gGUGGCuGGGCCgcAGGCcggAGGCGuugcAGGg -3'
miRNA:   3'- -CGCUGuCCCGG--UCCG---UCCGCuaa-UCC- -5'
14596 5' -57 NC_003521.1 + 206576 0.67 0.895924
Target:  5'- gGCGACGGGGCCgacAGGCcccGGCu------ -3'
miRNA:   3'- -CGCUGUCCCGG---UCCGu--CCGcuaaucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.