Results 1 - 20 of 217 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14598 | 5' | -54.3 | NC_003521.1 | + | 40426 | 0.8 | 0.372298 |
Target: 5'- aGGGAgGCcgAAGCGGCGGCc-GGAGCCg -3' miRNA: 3'- -CUCUaCGa-UUCGCCGUCGuuCCUCGG- -5' |
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14598 | 5' | -54.3 | NC_003521.1 | + | 187152 | 0.73 | 0.717731 |
Target: 5'- --cAUGCccGGCGGCGGCA-GGAGCg -3' miRNA: 3'- cucUACGauUCGCCGUCGUuCCUCGg -5' |
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14598 | 5' | -54.3 | NC_003521.1 | + | 167594 | 0.73 | 0.727603 |
Target: 5'- -cGAUGgaGAGCGGCGcGCAgAGGcGCCg -3' miRNA: 3'- cuCUACgaUUCGCCGU-CGU-UCCuCGG- -5' |
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14598 | 5' | -54.3 | NC_003521.1 | + | 183902 | 0.66 | 0.978487 |
Target: 5'- cGAGGUGCUGgaGGCGGU-GCugcGGcGCUg -3' miRNA: 3'- -CUCUACGAU--UCGCCGuCGuu-CCuCGG- -5' |
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14598 | 5' | -54.3 | NC_003521.1 | + | 123063 | 0.76 | 0.545745 |
Target: 5'- ---cUGCUGggacGGCGGCGGCGgAGGAGCUc -3' miRNA: 3'- cucuACGAU----UCGCCGUCGU-UCCUCGG- -5' |
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14598 | 5' | -54.3 | NC_003521.1 | + | 190535 | 0.76 | 0.575828 |
Target: 5'- cGAGGUGC--GGCGGCAGCAGcggcGGAcCCg -3' miRNA: 3'- -CUCUACGauUCGCCGUCGUU----CCUcGG- -5' |
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14598 | 5' | -54.3 | NC_003521.1 | + | 135232 | 0.75 | 0.62667 |
Target: 5'- uGAGcgGCUGcgccGGCGGCGGCGAcgacacggcggcGGAcGCCg -3' miRNA: 3'- -CUCuaCGAU----UCGCCGUCGUU------------CCU-CGG- -5' |
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14598 | 5' | -54.3 | NC_003521.1 | + | 123714 | 0.74 | 0.647087 |
Target: 5'- cGGcgGCUGAGCGGCGG--AGGcGGCCu -3' miRNA: 3'- cUCuaCGAUUCGCCGUCguUCC-UCGG- -5' |
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14598 | 5' | -54.3 | NC_003521.1 | + | 72974 | 0.74 | 0.687713 |
Target: 5'- --cAUGaagAAGCGGCcGCGGGGGGCCu -3' miRNA: 3'- cucUACga-UUCGCCGuCGUUCCUCGG- -5' |
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14598 | 5' | -54.3 | NC_003521.1 | + | 95217 | 0.73 | 0.707786 |
Target: 5'- cGGGUGCgacuGCaGCAGCGAGGccacGGCCg -3' miRNA: 3'- cUCUACGauu-CGcCGUCGUUCC----UCGG- -5' |
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14598 | 5' | -54.3 | NC_003521.1 | + | 109331 | 0.73 | 0.697777 |
Target: 5'- aGGcgGUUGAgGCGGCAGCAgccggcgcAGGAGgCCg -3' miRNA: 3'- cUCuaCGAUU-CGCCGUCGU--------UCCUC-GG- -5' |
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14598 | 5' | -54.3 | NC_003521.1 | + | 98535 | 0.74 | 0.677604 |
Target: 5'- uGGGccGCUGcAGCGGCGGCGGGucccagcccGAGCCc -3' miRNA: 3'- -CUCuaCGAU-UCGCCGUCGUUC---------CUCGG- -5' |
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14598 | 5' | -54.3 | NC_003521.1 | + | 123573 | 0.78 | 0.45918 |
Target: 5'- -cGGUgGCgggauGGCGGCGGCGccGGGAGCCg -3' miRNA: 3'- cuCUA-CGau---UCGCCGUCGU--UCCUCGG- -5' |
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14598 | 5' | -54.3 | NC_003521.1 | + | 187401 | 0.73 | 0.697777 |
Target: 5'- cGAGAccuuccgcUGCUcGGUGGCGcccgacgcccGCAAGGAGCUg -3' miRNA: 3'- -CUCU--------ACGAuUCGCCGU----------CGUUCCUCGG- -5' |
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14598 | 5' | -54.3 | NC_003521.1 | + | 123160 | 0.77 | 0.485389 |
Target: 5'- -uGGUGCUGcugcugagguggcGGCGGCGGCGGGGgaccguaGGCCg -3' miRNA: 3'- cuCUACGAU-------------UCGCCGUCGUUCC-------UCGG- -5' |
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14598 | 5' | -54.3 | NC_003521.1 | + | 197261 | 0.74 | 0.667457 |
Target: 5'- -cGGUGCUugacgcGGCgccGGCGGCGGGGAGCg -3' miRNA: 3'- cuCUACGAu-----UCG---CCGUCGUUCCUCGg -5' |
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14598 | 5' | -54.3 | NC_003521.1 | + | 113840 | 0.73 | 0.707786 |
Target: 5'- ----gGC--AGCGGCAGCGGGGcGGCCg -3' miRNA: 3'- cucuaCGauUCGCCGUCGUUCC-UCGG- -5' |
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14598 | 5' | -54.3 | NC_003521.1 | + | 155253 | 0.73 | 0.727603 |
Target: 5'- -uGGUGggGGGCGGCGGCGGcGGcGCCu -3' miRNA: 3'- cuCUACgaUUCGCCGUCGUU-CCuCGG- -5' |
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14598 | 5' | -54.3 | NC_003521.1 | + | 36395 | 0.77 | 0.496838 |
Target: 5'- --cGUGCUGcuGGCGGCAGCGcGGGGCg -3' miRNA: 3'- cucUACGAU--UCGCCGUCGUuCCUCGg -5' |
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14598 | 5' | -54.3 | NC_003521.1 | + | 190970 | 0.75 | 0.59 |
Target: 5'- uGAGcAUGCUggacgaggccGAGCGGCAGCAggcgcagguggacguGGGcAGCCu -3' miRNA: 3'- -CUC-UACGA----------UUCGCCGUCGU---------------UCC-UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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