miRNA display CGI


Results 1 - 20 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14599 3' -57.4 NC_003521.1 + 239806 0.66 0.926338
Target:  5'- aGCAGGAagacgAGGUGuugaCGCCAGaugGCCAu -3'
miRNA:   3'- gUGUCCU-----UCCACug--GUGGUCg--CGGUc -5'
14599 3' -57.4 NC_003521.1 + 239772 0.75 0.465177
Target:  5'- gCGCAGGucGGUGGCC-CCGaCGCCGGc -3'
miRNA:   3'- -GUGUCCuuCCACUGGuGGUcGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 239714 0.7 0.745028
Target:  5'- cCGCcucguGGAcgauGGUGGCCACCAGCacgauCCAGg -3'
miRNA:   3'- -GUGu----CCUu---CCACUGGUGGUCGc----GGUC- -5'
14599 3' -57.4 NC_003521.1 + 237406 0.68 0.856227
Target:  5'- gGCGGGGgucuGaGUGGCCccauccccggauGCCGGCGUCGGg -3'
miRNA:   3'- gUGUCCUu---C-CACUGG------------UGGUCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 236677 0.68 0.824732
Target:  5'- cCugGGGAAGGggagaGCCGCCGGC-CCGc -3'
miRNA:   3'- -GugUCCUUCCac---UGGUGGUCGcGGUc -5'
14599 3' -57.4 NC_003521.1 + 227998 0.69 0.781735
Target:  5'- aACuGGcguAGGUGGCCACCAGguugGCCAc -3'
miRNA:   3'- gUGuCCu--UCCACUGGUGGUCg---CGGUc -5'
14599 3' -57.4 NC_003521.1 + 227904 0.7 0.754364
Target:  5'- ---cGGcccuGGUcccGCCACCAGCGCCAGg -3'
miRNA:   3'- guguCCuu--CCAc--UGGUGGUCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 226461 0.67 0.877877
Target:  5'- -cCAGGuuGuG-GGCCACCAGCaCCAGg -3'
miRNA:   3'- guGUCCuuC-CaCUGGUGGUCGcGGUC- -5'
14599 3' -57.4 NC_003521.1 + 226390 0.67 0.897682
Target:  5'- cCGCAGGGccGUGugCACCA-CGUCAc -3'
miRNA:   3'- -GUGUCCUucCACugGUGGUcGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 226123 0.68 0.848623
Target:  5'- gCACAGGuuGGcGcggaugccccACCACCAGCGgCGGc -3'
miRNA:   3'- -GUGUCCuuCCaC----------UGGUGGUCGCgGUC- -5'
14599 3' -57.4 NC_003521.1 + 223745 0.71 0.706839
Target:  5'- gGCGGGAacguGGGUcGCCGCCAGCGgUAu -3'
miRNA:   3'- gUGUCCU----UCCAcUGGUGGUCGCgGUc -5'
14599 3' -57.4 NC_003521.1 + 223440 0.67 0.875793
Target:  5'- aUAUAGGGAgcGGUcccucucgagucugGGCCGCC-GCGCCGGc -3'
miRNA:   3'- -GUGUCCUU--CCA--------------CUGGUGGuCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 223325 0.69 0.807973
Target:  5'- -cCGGGAAccgccGUGACCGgCGGCGCCGc -3'
miRNA:   3'- guGUCCUUc----CACUGGUgGUCGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 222016 0.68 0.847852
Target:  5'- gGCGGGAAGcacuUGGCCACgcgaaagCAGCGCUGGc -3'
miRNA:   3'- gUGUCCUUCc---ACUGGUG-------GUCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 220088 0.73 0.568981
Target:  5'- aACAGGAGGGUcaguccgcugacGAUCAUCAcgucacGCGCCAGg -3'
miRNA:   3'- gUGUCCUUCCA------------CUGGUGGU------CGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 219235 0.68 0.856227
Target:  5'- uGCAGGAcccAGGU---CAgCAGCGCCGGg -3'
miRNA:   3'- gUGUCCU---UCCAcugGUgGUCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 219148 0.67 0.891292
Target:  5'- gACAGGcAGGGU-ACCAgCAgGCGCCGc -3'
miRNA:   3'- gUGUCC-UUCCAcUGGUgGU-CGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 218606 0.68 0.832869
Target:  5'- aAgAGGuacGGUucGGCCGCCAGCGCgCGGc -3'
miRNA:   3'- gUgUCCuu-CCA--CUGGUGGUCGCG-GUC- -5'
14599 3' -57.4 NC_003521.1 + 217490 0.69 0.807973
Target:  5'- aGCAGGAacgugcAGGUGGCCugCAugGCCAc -3'
miRNA:   3'- gUGUCCU------UCCACUGGugGUcgCGGUc -5'
14599 3' -57.4 NC_003521.1 + 217304 0.67 0.877877
Target:  5'- gACAGGguGGUGACCACgcugUAGauCGUCAGc -3'
miRNA:   3'- gUGUCCuuCCACUGGUG----GUC--GCGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.