miRNA display CGI


Results 1 - 20 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14599 3' -57.4 NC_003521.1 + 140950 0.81 0.216375
Target:  5'- cUACAuGGAGacGGUGGCCGCCAuGCGCCAGc -3'
miRNA:   3'- -GUGU-CCUU--CCACUGGUGGU-CGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 111586 0.7 0.745028
Target:  5'- -cCAGGugccgcGcGUGGCCAgCGGCGCCGGa -3'
miRNA:   3'- guGUCCuu----C-CACUGGUgGUCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 39487 0.7 0.745028
Target:  5'- cCGCcucguGGAcgauGGUGGCCACCAGCacgauCCAGg -3'
miRNA:   3'- -GUGu----CCUu---CCACUGGUGGUCGc----GGUC- -5'
14599 3' -57.4 NC_003521.1 + 86359 0.66 0.931401
Target:  5'- gGCGGuGccGGUGACCAaCAGCGUgCGGa -3'
miRNA:   3'- gUGUC-CuuCCACUGGUgGUCGCG-GUC- -5'
14599 3' -57.4 NC_003521.1 + 204704 0.74 0.530297
Target:  5'- gGCAGcGAGGUGACCACCA-CGgCGGg -3'
miRNA:   3'- gUGUCcUUCCACUGGUGGUcGCgGUC- -5'
14599 3' -57.4 NC_003521.1 + 204902 0.74 0.534125
Target:  5'- gGCGGGAcGGUGGCCGCCGauguauauaaagugcGUGCCGu -3'
miRNA:   3'- gUGUCCUuCCACUGGUGGU---------------CGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 220088 0.73 0.568981
Target:  5'- aACAGGAGGGUcaguccgcugacGAUCAUCAcgucacGCGCCAGg -3'
miRNA:   3'- gUGUCCUUCCA------------CUGGUGGU------CGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 77114 0.72 0.608328
Target:  5'- aCGCAGGAuucGGccucGUGGCCGCCguuGGCGCCGc -3'
miRNA:   3'- -GUGUCCU---UC----CACUGGUGG---UCGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 101763 0.72 0.628127
Target:  5'- --gAGGccAGGGUGAUCugCGGCGCCGu -3'
miRNA:   3'- gugUCC--UUCCACUGGugGUCGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 15227 0.7 0.745028
Target:  5'- uGCAGGcggccGAGcGcgaGGCCGCCgAGCGCCAGg -3'
miRNA:   3'- gUGUCC-----UUC-Ca--CUGGUGG-UCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 212671 0.71 0.677546
Target:  5'- uCGCGGGcauGGUcGCCGCCGuCGCCAGg -3'
miRNA:   3'- -GUGUCCuu-CCAcUGGUGGUcGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 185729 0.72 0.627137
Target:  5'- gGguGcGGAGGUGAUCGCCGagcggguGCGCCGGa -3'
miRNA:   3'- gUguC-CUUCCACUGGUGGU-------CGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 165263 0.78 0.341529
Target:  5'- gACAGGAGGGcGcuggcguagccGCCGCCGGCGCCGc -3'
miRNA:   3'- gUGUCCUUCCaC-----------UGGUGGUCGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 223745 0.71 0.706839
Target:  5'- gGCGGGAacguGGGUcGCCGCCAGCGgUAu -3'
miRNA:   3'- gUGUCCU----UCCAcUGGUGGUCGCgGUc -5'
14599 3' -57.4 NC_003521.1 + 39545 0.75 0.465177
Target:  5'- gCGCAGGucGGUGGCC-CCGaCGCCGGc -3'
miRNA:   3'- -GUGUCCuuCCACUGGuGGUcGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 89738 0.72 0.618223
Target:  5'- gCACGGGGGcGGUGACggcaGCCGGCGCg-- -3'
miRNA:   3'- -GUGUCCUU-CCACUGg---UGGUCGCGguc -5'
14599 3' -57.4 NC_003521.1 + 49595 0.7 0.735598
Target:  5'- --gAGGAAGGcG-UCACCGGCGCUGGg -3'
miRNA:   3'- gugUCCUUCCaCuGGUGGUCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 7814 0.7 0.745028
Target:  5'- aGCuGGAcGGcgucaaGGCCAuCCGGCGCCAGa -3'
miRNA:   3'- gUGuCCUuCCa-----CUGGU-GGUCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 72072 0.74 0.501924
Target:  5'- gACAGGAGGcG-GACCACCAG-GCCGu -3'
miRNA:   3'- gUGUCCUUC-CaCUGGUGGUCgCGGUc -5'
14599 3' -57.4 NC_003521.1 + 129097 0.74 0.539886
Target:  5'- uGCAGGcuguGGGUGGCgUGCCGGCGCaCGGa -3'
miRNA:   3'- gUGUCCu---UCCACUG-GUGGUCGCG-GUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.