miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14599 5' -63 NC_003521.1 + 120374 0.66 0.760225
Target:  5'- uCGCUGuauuauuuGCGgCGGaCGCGagcaucGGuGUCCUCCu -3'
miRNA:   3'- -GCGACu-------CGUgGCC-GCGC------CC-CAGGAGG- -5'
14599 5' -63 NC_003521.1 + 175722 0.66 0.760225
Target:  5'- aGCUGucGGCGCCgcucuuccuccuGGCGCc-GGUUCUCCu -3'
miRNA:   3'- gCGAC--UCGUGG------------CCGCGccCCAGGAGG- -5'
14599 5' -63 NC_003521.1 + 124010 0.66 0.760225
Target:  5'- cCGCUGcAGCACCca-GuCGGGGUCgCggCCg -3'
miRNA:   3'- -GCGAC-UCGUGGccgC-GCCCCAG-Ga-GG- -5'
14599 5' -63 NC_003521.1 + 92034 0.66 0.760225
Target:  5'- gCGgUGGGU-CCGGgGgucccCGGGGUgCCUCCc -3'
miRNA:   3'- -GCgACUCGuGGCCgC-----GCCCCA-GGAGG- -5'
14599 5' -63 NC_003521.1 + 16285 0.66 0.759348
Target:  5'- uGCUGGGCgccgugggugccuACCGGCcCGGcGGcUUCUUCg -3'
miRNA:   3'- gCGACUCG-------------UGGCCGcGCC-CC-AGGAGG- -5'
14599 5' -63 NC_003521.1 + 13841 0.66 0.751415
Target:  5'- uGuCUGuauuuGGC-UCGGCGCGGGGgUCUCUg -3'
miRNA:   3'- gC-GAC-----UCGuGGCCGCGCCCCaGGAGG- -5'
14599 5' -63 NC_003521.1 + 7814 0.66 0.751415
Target:  5'- aGCUGgacggcgucaaGGCcauCCGGCGCcagaagacgagGGGGUggcggacggCCUCCa -3'
miRNA:   3'- gCGAC-----------UCGu--GGCCGCG-----------CCCCA---------GGAGG- -5'
14599 5' -63 NC_003521.1 + 149970 0.66 0.751415
Target:  5'- gCGUUG-GCACUGugccGCGCaugcucuauugGGGGUgCCUCCc -3'
miRNA:   3'- -GCGACuCGUGGC----CGCG-----------CCCCA-GGAGG- -5'
14599 5' -63 NC_003521.1 + 12194 0.66 0.751415
Target:  5'- uGgUGGuUugCGcGcCGCGGGGUUCUCCu -3'
miRNA:   3'- gCgACUcGugGC-C-GCGCCCCAGGAGG- -5'
14599 5' -63 NC_003521.1 + 3968 0.66 0.751415
Target:  5'- aGCggaggacccgGGGCACCGucaGCGCGGaGGUCUggCg -3'
miRNA:   3'- gCGa---------CUCGUGGC---CGCGCC-CCAGGagG- -5'
14599 5' -63 NC_003521.1 + 220562 0.66 0.74341
Target:  5'- cCGCUGAGCguACCGGCGaCGGcuuaugaaaacagCCgUCCg -3'
miRNA:   3'- -GCGACUCG--UGGCCGC-GCCcca----------GG-AGG- -5'
14599 5' -63 NC_003521.1 + 45629 0.66 0.742517
Target:  5'- aCGCaGAcggccaccGcCGCCGGCuccGCGGGGUCCg-- -3'
miRNA:   3'- -GCGaCU--------C-GUGGCCG---CGCCCCAGGagg -5'
14599 5' -63 NC_003521.1 + 87263 0.66 0.742517
Target:  5'- gGCUGuGCGCCGuGCGCGuGG-CCa-- -3'
miRNA:   3'- gCGACuCGUGGC-CGCGCcCCaGGagg -5'
14599 5' -63 NC_003521.1 + 5829 0.66 0.742517
Target:  5'- uGCcGGGUcCCGGCGacCGGGGcCCUUUu -3'
miRNA:   3'- gCGaCUCGuGGCCGC--GCCCCaGGAGG- -5'
14599 5' -63 NC_003521.1 + 227607 0.66 0.742517
Target:  5'- gGCuUGGGCGCCGGU-CGGc--CCUCCa -3'
miRNA:   3'- gCG-ACUCGUGGCCGcGCCccaGGAGG- -5'
14599 5' -63 NC_003521.1 + 129823 0.66 0.742517
Target:  5'- uGCUGGGcCGCCuGCuGCuGGGGcCCguggCCg -3'
miRNA:   3'- gCGACUC-GUGGcCG-CG-CCCCaGGa---GG- -5'
14599 5' -63 NC_003521.1 + 212488 0.66 0.737138
Target:  5'- uCGCUaucGGcCACCGGCGguccgcaggccgcgcCGGGGUCgCUgCCg -3'
miRNA:   3'- -GCGAc--UC-GUGGCCGC---------------GCCCCAG-GA-GG- -5'
14599 5' -63 NC_003521.1 + 176539 0.66 0.733536
Target:  5'- aGCcGcGCugCGGgGaGGGGUCCUUg -3'
miRNA:   3'- gCGaCuCGugGCCgCgCCCCAGGAGg -5'
14599 5' -63 NC_003521.1 + 180220 0.66 0.733536
Target:  5'- gCGUUGguGGUGCCGcGCGUGuGGG-CCUCg -3'
miRNA:   3'- -GCGAC--UCGUGGC-CGCGC-CCCaGGAGg -5'
14599 5' -63 NC_003521.1 + 191887 0.66 0.733536
Target:  5'- -aCUGGGCGgCGGCGCcacGUCCUUCa -3'
miRNA:   3'- gcGACUCGUgGCCGCGcccCAGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.