miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14600 5' -55.7 NC_003521.1 + 167727 0.66 0.973603
Target:  5'- aCGGUGGauugCGUGGCGcuGCGguggccGGCGg -3'
miRNA:   3'- -GCCACCa---GCGCCGC--UGCaauau-CCGU- -5'
14600 5' -55.7 NC_003521.1 + 122679 0.66 0.973603
Target:  5'- gGGUGGcgUCGcCGGUGAUc--AUGGGCGu -3'
miRNA:   3'- gCCACC--AGC-GCCGCUGcaaUAUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 101339 0.66 0.97093
Target:  5'- ---gGGUUGCGGUGuACGUaGUugAGGCAg -3'
miRNA:   3'- gccaCCAGCGCCGC-UGCAaUA--UCCGU- -5'
14600 5' -55.7 NC_003521.1 + 128239 0.66 0.97093
Target:  5'- uGGcgcGGUCGCGGUucagcagguaGGcCGUgGUGGGCAg -3'
miRNA:   3'- gCCa--CCAGCGCCG----------CU-GCAaUAUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 223731 0.66 0.97093
Target:  5'- aCGGcgGGUC-CGGUGGCGggaacGUGGGUc -3'
miRNA:   3'- -GCCa-CCAGcGCCGCUGCaa---UAUCCGu -5'
14600 5' -55.7 NC_003521.1 + 98317 0.66 0.97093
Target:  5'- -aGUGGUgGCGGCGGCcacgacggugGUUGcgcuGGCAg -3'
miRNA:   3'- gcCACCAgCGCCGCUG----------CAAUau--CCGU- -5'
14600 5' -55.7 NC_003521.1 + 120927 0.66 0.969236
Target:  5'- gCGGcUGccCGCGGCGGCGgcuccggcgagGGGCAg -3'
miRNA:   3'- -GCC-ACcaGCGCCGCUGCaaua-------UCCGU- -5'
14600 5' -55.7 NC_003521.1 + 77693 0.66 0.968069
Target:  5'- aCGcUGGcgaagacagcCGUGGCGGCGUUGUuGGCGa -3'
miRNA:   3'- -GCcACCa---------GCGCCGCUGCAAUAuCCGU- -5'
14600 5' -55.7 NC_003521.1 + 98470 0.66 0.968069
Target:  5'- aGGUaGUCGUaguGGUGGuCGUcGUGGGCAa -3'
miRNA:   3'- gCCAcCAGCG---CCGCU-GCAaUAUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 191084 0.66 0.965013
Target:  5'- -cGUGGUgGCGGCGGCG-----GGCu -3'
miRNA:   3'- gcCACCAgCGCCGCUGCaauauCCGu -5'
14600 5' -55.7 NC_003521.1 + 18734 0.66 0.965013
Target:  5'- gCGGcGGcgaUCGUGGCGGCGgu---GGCGc -3'
miRNA:   3'- -GCCaCC---AGCGCCGCUGCaauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 86203 0.66 0.965013
Target:  5'- aCGGUGGagGCgaagGGCGGCGgcacgccGGCGg -3'
miRNA:   3'- -GCCACCagCG----CCGCUGCaauau--CCGU- -5'
14600 5' -55.7 NC_003521.1 + 116407 0.66 0.965013
Target:  5'- uGGuUGGguaGCGGCGGCGau---GGCAc -3'
miRNA:   3'- gCC-ACCag-CGCCGCUGCaauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 6491 0.66 0.965013
Target:  5'- cCGGcagcGGagGCGGUGACGgcagAGGCu -3'
miRNA:   3'- -GCCa---CCagCGCCGCUGCaauaUCCGu -5'
14600 5' -55.7 NC_003521.1 + 76425 0.66 0.965013
Target:  5'- uGGUGGU-GCuGGCGAcCGUUGUcguugGGGUu -3'
miRNA:   3'- gCCACCAgCG-CCGCU-GCAAUA-----UCCGu -5'
14600 5' -55.7 NC_003521.1 + 19940 0.66 0.965013
Target:  5'- aGGUGGgcgagaUCGUGGUGAgGUggccGGGCu -3'
miRNA:   3'- gCCACC------AGCGCCGCUgCAaua-UCCGu -5'
14600 5' -55.7 NC_003521.1 + 226484 0.66 0.961758
Target:  5'- aGGUacuGGUCGCGG-G-UGUcGUAGGCGu -3'
miRNA:   3'- gCCA---CCAGCGCCgCuGCAaUAUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 53355 0.66 0.961758
Target:  5'- ---cGG-CGCGGCGGCGgag-GGGCc -3'
miRNA:   3'- gccaCCaGCGCCGCUGCaauaUCCGu -5'
14600 5' -55.7 NC_003521.1 + 209083 0.66 0.961758
Target:  5'- ---cGGUCGaGGCGGCGg---AGGCGg -3'
miRNA:   3'- gccaCCAGCgCCGCUGCaauaUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 183461 0.66 0.958298
Target:  5'- uGGcGcGUCaCGGCGGCGgucUGGGCAg -3'
miRNA:   3'- gCCaC-CAGcGCCGCUGCaauAUCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.