miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14603 3' -63.8 NC_003521.1 + 240622 0.68 0.584032
Target:  5'- --cGGCGGcguGCGGCgGGCCGG-CCggUCGg -3'
miRNA:   3'- ccaCCGCC---UGCCG-CCGGCCaGG--AGCa -5'
14603 3' -63.8 NC_003521.1 + 240116 0.66 0.704571
Target:  5'- uGG-GGUGGGCGuGCGGUC-GUCC-CGg -3'
miRNA:   3'- -CCaCCGCCUGC-CGCCGGcCAGGaGCa -5'
14603 3' -63.8 NC_003521.1 + 240033 0.67 0.649139
Target:  5'- --cGGCgGGGCGcCGGgCGGUCCUCc- -3'
miRNA:   3'- ccaCCG-CCUGCcGCCgGCCAGGAGca -5'
14603 3' -63.8 NC_003521.1 + 229404 0.66 0.713672
Target:  5'- gGGUGGCGGguACGGggacaCGGCguauaaGGUUCUCa- -3'
miRNA:   3'- -CCACCGCC--UGCC-----GCCGg-----CCAGGAGca -5'
14603 3' -63.8 NC_003521.1 + 224436 0.66 0.69542
Target:  5'- cGUGGUGGGCGaGCGGuCCaGGUgcgUCUUGa -3'
miRNA:   3'- cCACCGCCUGC-CGCC-GG-CCA---GGAGCa -5'
14603 3' -63.8 NC_003521.1 + 224019 0.66 0.686225
Target:  5'- --cGGCGGGCccGGCGGUCGGggcgggcgCCgUCGc -3'
miRNA:   3'- ccaCCGCCUG--CCGCCGGCCa-------GG-AGCa -5'
14603 3' -63.8 NC_003521.1 + 223993 0.66 0.69542
Target:  5'- --cGGCGa--GGaCGGUCGGUCCUCa- -3'
miRNA:   3'- ccaCCGCcugCC-GCCGGCCAGGAGca -5'
14603 3' -63.8 NC_003521.1 + 221823 0.68 0.60629
Target:  5'- cGG-GGCGGGCGugucucccucgucgcGCGG-CGcGUCCUCGa -3'
miRNA:   3'- -CCaCCGCCUGC---------------CGCCgGC-CAGGAGCa -5'
14603 3' -63.8 NC_003521.1 + 218633 0.71 0.418419
Target:  5'- --cGGCGGuaaGCGGCcacGGCCGGcggcgCCUCGUc -3'
miRNA:   3'- ccaCCGCC---UGCCG---CCGGCCa----GGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 217338 1.09 0.001207
Target:  5'- cGGUGGCGGACGGCGGCCGGUCCUCGUa -3'
miRNA:   3'- -CCACCGCCUGCCGCCGGCCAGGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 212906 0.67 0.639824
Target:  5'- cGGUGGacucgaGGACGGCG--CGGUCUUCu- -3'
miRNA:   3'- -CCACCg-----CCUGCCGCcgGCCAGGAGca -5'
14603 3' -63.8 NC_003521.1 + 212072 0.67 0.64914
Target:  5'- --gGGCGGugGcGCGGCCcgcgcgcgucuGGUUgUCGg -3'
miRNA:   3'- ccaCCGCCugC-CGCCGG-----------CCAGgAGCa -5'
14603 3' -63.8 NC_003521.1 + 209560 0.73 0.329617
Target:  5'- gGGUGGCGGcgACGGUGGCgggGGUCCgggggCGc -3'
miRNA:   3'- -CCACCGCC--UGCCGCCGg--CCAGGa----GCa -5'
14603 3' -63.8 NC_003521.1 + 209089 0.67 0.658444
Target:  5'- aGGcGGCGGagGCGGUGGCCGcggcGUCC-Ca- -3'
miRNA:   3'- -CCaCCGCC--UGCCGCCGGC----CAGGaGca -5'
14603 3' -63.8 NC_003521.1 + 200301 0.68 0.584032
Target:  5'- --cGGCGGcguGCGGCgGGCCGG-CCggUCGg -3'
miRNA:   3'- ccaCCGCC---UGCCG-CCGGCCaGG--AGCa -5'
14603 3' -63.8 NC_003521.1 + 199379 0.66 0.722715
Target:  5'- cGUGGUGuaGACGGCGGCgGGgg-UCGa -3'
miRNA:   3'- cCACCGC--CUGCCGCCGgCCaggAGCa -5'
14603 3' -63.8 NC_003521.1 + 198390 0.66 0.69542
Target:  5'- uGUGGCGGGCGGCGacuCCGGcgUUUGa -3'
miRNA:   3'- cCACCGCCUGCCGCc--GGCCagGAGCa -5'
14603 3' -63.8 NC_003521.1 + 197190 0.68 0.574803
Target:  5'- --cGGCGG-CGGCcGCCGccuccuccucGUCCUCGUu -3'
miRNA:   3'- ccaCCGCCuGCCGcCGGC----------CAGGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 196889 0.66 0.722715
Target:  5'- gGGUgaGGCcgGGGCGGaaGGCgGGUCgUCGUu -3'
miRNA:   3'- -CCA--CCG--CCUGCCg-CCGgCCAGgAGCA- -5'
14603 3' -63.8 NC_003521.1 + 195198 0.66 0.704572
Target:  5'- --cGGCGG-CGGUGGCC-GUCUgCGUc -3'
miRNA:   3'- ccaCCGCCuGCCGCCGGcCAGGaGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.