miRNA display CGI


Results 1 - 20 of 109 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14603 3' -63.8 NC_003521.1 + 155253 0.79 0.144963
Target:  5'- uGGUGGgGGGCGGCGGCggCGGcgCCUCa- -3'
miRNA:   3'- -CCACCgCCUGCCGCCG--GCCa-GGAGca -5'
14603 3' -63.8 NC_003521.1 + 74906 0.68 0.574803
Target:  5'- cGGUGGCGG-CGGUGGaguCGG-CC-CGg -3'
miRNA:   3'- -CCACCGCCuGCCGCCg--GCCaGGaGCa -5'
14603 3' -63.8 NC_003521.1 + 197190 0.68 0.574803
Target:  5'- --cGGCGG-CGGCcGCCGccuccuccucGUCCUCGUu -3'
miRNA:   3'- ccaCCGCCuGCCGcCGGC----------CAGGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 175165 0.66 0.731693
Target:  5'- gGGUcGCGGAUGGCGuucuCCaGGUCCUgGc -3'
miRNA:   3'- -CCAcCGCCUGCCGCc---GG-CCAGGAgCa -5'
14603 3' -63.8 NC_003521.1 + 186663 0.74 0.2846
Target:  5'- cGGUGGCGGA-GGCGGC-GG-CCUCu- -3'
miRNA:   3'- -CCACCGCCUgCCGCCGgCCaGGAGca -5'
14603 3' -63.8 NC_003521.1 + 123573 0.73 0.309705
Target:  5'- cGGUGGCGGgaugGCGGCGGCgcCGGgagCCgccgCGg -3'
miRNA:   3'- -CCACCGCC----UGCCGCCG--GCCa--GGa---GCa -5'
14603 3' -63.8 NC_003521.1 + 123694 0.72 0.38647
Target:  5'- cGUGGCGGuggaagaggagGCGGCGGCugagcggcggaggCGG-CCUCGUc -3'
miRNA:   3'- cCACCGCC-----------UGCCGCCG-------------GCCaGGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 165127 0.71 0.434575
Target:  5'- uGGU-GCGGACGGgGGCUGGaCCgCGg -3'
miRNA:   3'- -CCAcCGCCUGCCgCCGGCCaGGaGCa -5'
14603 3' -63.8 NC_003521.1 + 105168 0.7 0.502568
Target:  5'- --aGGC-GACGGgGGCUGGacUCCUCGg -3'
miRNA:   3'- ccaCCGcCUGCCgCCGGCC--AGGAGCa -5'
14603 3' -63.8 NC_003521.1 + 135750 0.69 0.556451
Target:  5'- cGGUGGUGG-CGGCGGUgGGaucgccCCUgGg -3'
miRNA:   3'- -CCACCGCCuGCCGCCGgCCa-----GGAgCa -5'
14603 3' -63.8 NC_003521.1 + 169450 0.69 0.5203
Target:  5'- --cGGCGucGGCGGCGGCgGGUUCgUCGc -3'
miRNA:   3'- ccaCCGC--CUGCCGCCGgCCAGG-AGCa -5'
14603 3' -63.8 NC_003521.1 + 17013 0.7 0.493801
Target:  5'- cGGUGGCGG-CGGCgcaGGCCcGUCgUCu- -3'
miRNA:   3'- -CCACCGCCuGCCG---CCGGcCAGgAGca -5'
14603 3' -63.8 NC_003521.1 + 76210 0.77 0.200119
Target:  5'- cGGUGGUGGuaugagugGCGGCGGCCGGUgg-CGUg -3'
miRNA:   3'- -CCACCGCC--------UGCCGCCGGCCAggaGCA- -5'
14603 3' -63.8 NC_003521.1 + 97379 0.69 0.547337
Target:  5'- -cUGGCGGuCGaGCGGCCaGaCCUCGc -3'
miRNA:   3'- ccACCGCCuGC-CGCCGGcCaGGAGCa -5'
14603 3' -63.8 NC_003521.1 + 123174 0.75 0.266847
Target:  5'- aGGUGGCGG-CGGCGGCgGGggaC-CGUa -3'
miRNA:   3'- -CCACCGCCuGCCGCCGgCCag-GaGCA- -5'
14603 3' -63.8 NC_003521.1 + 186930 0.7 0.476483
Target:  5'- cGGUGGCGGggGCGGCGGCgaaCGcaaCUCGa -3'
miRNA:   3'- -CCACCGCC--UGCCGCCG---GCcagGAGCa -5'
14603 3' -63.8 NC_003521.1 + 117416 0.69 0.556451
Target:  5'- --gGGUGGAgGGCGGCaucucgGGUCCgcgCGg -3'
miRNA:   3'- ccaCCGCCUgCCGCCGg-----CCAGGa--GCa -5'
14603 3' -63.8 NC_003521.1 + 44764 0.68 0.574803
Target:  5'- cGGaccGCGGAaGGCGGCCGGUgCUgGc -3'
miRNA:   3'- -CCac-CGCCUgCCGCCGGCCAgGAgCa -5'
14603 3' -63.8 NC_003521.1 + 98472 0.75 0.266847
Target:  5'- cGGcGGCGGccGCGGCGGCCGuGgcggcggCCUCGc -3'
miRNA:   3'- -CCaCCGCC--UGCCGCCGGC-Ca------GGAGCa -5'
14603 3' -63.8 NC_003521.1 + 104684 0.72 0.357611
Target:  5'- aGGUGGUGG-CGGCGcGCCacgGGguagagcgCCUCGUa -3'
miRNA:   3'- -CCACCGCCuGCCGC-CGG---CCa-------GGAGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.