miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14604 3' -55 NC_003521.1 + 240388 0.68 0.912273
Target:  5'- gGCgagaAGCGCAGGcgUGCGuGUGUgagCUCCg -3'
miRNA:   3'- aCG----UCGUGUCCuuGUGC-CACGa--GAGG- -5'
14604 3' -55 NC_003521.1 + 239444 0.67 0.955504
Target:  5'- aGCAGCGCgggcucGGGGACAgCGGUGg-C-CCg -3'
miRNA:   3'- aCGUCGUG------UCCUUGU-GCCACgaGaGG- -5'
14604 3' -55 NC_003521.1 + 239217 0.66 0.97445
Target:  5'- cGCAGCACAGGcGCugGuGgaugugGCgCUgCa -3'
miRNA:   3'- aCGUCGUGUCCuUGugC-Ca-----CGaGAgG- -5'
14604 3' -55 NC_003521.1 + 237030 0.71 0.818347
Target:  5'- aGC-GUGCuGGAuCGCGGUGCUCUgugCCg -3'
miRNA:   3'- aCGuCGUGuCCUuGUGCCACGAGA---GG- -5'
14604 3' -55 NC_003521.1 + 229408 0.73 0.687532
Target:  5'- gGCgGGUACGGGGACACGGcguauaagGUUCUCa -3'
miRNA:   3'- aCG-UCGUGUCCUUGUGCCa-------CGAGAGg -5'
14604 3' -55 NC_003521.1 + 228990 0.72 0.774118
Target:  5'- gGCGGCGCAGGAccggcaGCACGGaGCUa--- -3'
miRNA:   3'- aCGUCGUGUCCU------UGUGCCaCGAgagg -5'
14604 3' -55 NC_003521.1 + 228534 0.66 0.968945
Target:  5'- aGCAGguUGGGAACuguGG-GgUCUCCa -3'
miRNA:   3'- aCGUCguGUCCUUGug-CCaCgAGAGG- -5'
14604 3' -55 NC_003521.1 + 226885 0.67 0.959181
Target:  5'- gGCAGCuGCGGGGGCaccacgGCGGccagcgcgGC-CUCCg -3'
miRNA:   3'- aCGUCG-UGUCCUUG------UGCCa-------CGaGAGG- -5'
14604 3' -55 NC_003521.1 + 226118 0.68 0.923486
Target:  5'- gGCGuGCACAGGuugGCGCGGaUGC-C-CCa -3'
miRNA:   3'- aCGU-CGUGUCCu--UGUGCC-ACGaGaGG- -5'
14604 3' -55 NC_003521.1 + 225862 0.73 0.687532
Target:  5'- gUGCgGGCACAGGuGC-CGGUGCUC-Ca -3'
miRNA:   3'- -ACG-UCGUGUCCuUGuGCCACGAGaGg -5'
14604 3' -55 NC_003521.1 + 225673 0.68 0.938577
Target:  5'- gUGCAGCACcaAGGcgUugGGguccagGCgCUCCc -3'
miRNA:   3'- -ACGUCGUG--UCCuuGugCCa-----CGaGAGG- -5'
14604 3' -55 NC_003521.1 + 223164 0.68 0.927193
Target:  5'- cGCAGU-CuGGAGgccgcaucgcucauCACGGUGUUCUCUu -3'
miRNA:   3'- aCGUCGuGuCCUU--------------GUGCCACGAGAGG- -5'
14604 3' -55 NC_003521.1 + 222526 0.67 0.9427
Target:  5'- --aAGCACAGGcgaaagaAACuGCGGUGCggccCUCCc -3'
miRNA:   3'- acgUCGUGUCC-------UUG-UGCCACGa---GAGG- -5'
14604 3' -55 NC_003521.1 + 222230 0.7 0.842193
Target:  5'- cGCGGCugggccGCAGGAACcagucgaGCGc-GCUCUCCa -3'
miRNA:   3'- aCGUCG------UGUCCUUG-------UGCcaCGAGAGG- -5'
14604 3' -55 NC_003521.1 + 219715 0.7 0.842989
Target:  5'- gGCAGCGgAGGca-ACGGUcuauCUCUCCa -3'
miRNA:   3'- aCGUCGUgUCCuugUGCCAc---GAGAGG- -5'
14604 3' -55 NC_003521.1 + 217430 1.13 0.003081
Target:  5'- gUGCAGCACAGGAACACGGUGCUCUCCa -3'
miRNA:   3'- -ACGUCGUGUCCUUGUGCCACGAGAGG- -5'
14604 3' -55 NC_003521.1 + 215436 0.66 0.97445
Target:  5'- cGCGGguCuGGGAGCAgGGUGUcCggcgCCg -3'
miRNA:   3'- aCGUCguG-UCCUUGUgCCACGaGa---GG- -5'
14604 3' -55 NC_003521.1 + 214565 0.66 0.971794
Target:  5'- gUGCAGUgagcaGCAGGGGCGaGGgGUcCUCCu -3'
miRNA:   3'- -ACGUCG-----UGUCCUUGUgCCaCGaGAGG- -5'
14604 3' -55 NC_003521.1 + 214339 0.68 0.912273
Target:  5'- cGCAucGCGcCAGaGAGCgcgcagGCGGUGCUC-CCa -3'
miRNA:   3'- aCGU--CGU-GUC-CUUG------UGCCACGAGaGG- -5'
14604 3' -55 NC_003521.1 + 213908 0.68 0.917995
Target:  5'- cGCgAGCGuguCuGGAGCGCGGUGCga-CCa -3'
miRNA:   3'- aCG-UCGU---GuCCUUGUGCCACGagaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.