miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14604 3' -55 NC_003521.1 + 125990 0.78 0.42653
Target:  5'- cGCAGCAU--GAGCACGGUGCgcgugcccagCUCCa -3'
miRNA:   3'- aCGUCGUGucCUUGUGCCACGa---------GAGG- -5'
14604 3' -55 NC_003521.1 + 186658 0.71 0.818347
Target:  5'- cGCGGCGguGGcgGAgGCGGcgGCcUCUCCa -3'
miRNA:   3'- aCGUCGUguCC--UUgUGCCa-CG-AGAGG- -5'
14604 3' -55 NC_003521.1 + 219715 0.7 0.842989
Target:  5'- gGCAGCGgAGGca-ACGGUcuauCUCUCCa -3'
miRNA:   3'- aCGUCGUgUCCuugUGCCAc---GAGAGG- -5'
14604 3' -55 NC_003521.1 + 183921 0.65 0.976919
Target:  5'- nUGCGGCGCuGucGCgACGGccaGCUCUCg -3'
miRNA:   3'- -ACGUCGUGuCcuUG-UGCCa--CGAGAGg -5'
14604 3' -55 NC_003521.1 + 93114 0.74 0.62741
Target:  5'- gUGC-GCACGGGucACAUGGUGCUggCCg -3'
miRNA:   3'- -ACGuCGUGUCCu-UGUGCCACGAgaGG- -5'
14604 3' -55 NC_003521.1 + 45780 0.74 0.667581
Target:  5'- aGCGGCggACGGGAcgACAUGGUGgUUUCUa -3'
miRNA:   3'- aCGUCG--UGUCCU--UGUGCCACgAGAGG- -5'
14604 3' -55 NC_003521.1 + 150031 0.73 0.707305
Target:  5'- gGgGGCugGGGAGgGgGGUaaggGCUCUCCg -3'
miRNA:   3'- aCgUCGugUCCUUgUgCCA----CGAGAGG- -5'
14604 3' -55 NC_003521.1 + 128049 0.73 0.717104
Target:  5'- gGCGGCcaGCAGGcACAUGGcgGC-CUCCa -3'
miRNA:   3'- aCGUCG--UGUCCuUGUGCCa-CGaGAGG- -5'
14604 3' -55 NC_003521.1 + 117489 0.72 0.736483
Target:  5'- cGCGGCGCuGGGGCcguCGGUGUUCg-- -3'
miRNA:   3'- aCGUCGUGuCCUUGu--GCCACGAGagg -5'
14604 3' -55 NC_003521.1 + 155098 0.71 0.80109
Target:  5'- cGCGGCgcuGCAGGAGCAgGGcGUggaggacuUCUCCc -3'
miRNA:   3'- aCGUCG---UGUCCUUGUgCCaCG--------AGAGG- -5'
14604 3' -55 NC_003521.1 + 101445 0.72 0.755511
Target:  5'- cGCGGgGCcaaGAGCACGGcGCUCUUCg -3'
miRNA:   3'- aCGUCgUGuc-CUUGUGCCaCGAGAGG- -5'
14604 3' -55 NC_003521.1 + 26168 0.72 0.736483
Target:  5'- cUGCuGCuGCuGGAGacggccauCACGGUGCUCUUCa -3'
miRNA:   3'- -ACGuCG-UGuCCUU--------GUGCCACGAGAGG- -5'
14604 3' -55 NC_003521.1 + 20310 0.76 0.517548
Target:  5'- aUGCAGCAcCAGGAggccaccACGCuGcUGCUCUCCc -3'
miRNA:   3'- -ACGUCGU-GUCCU-------UGUGcC-ACGAGAGG- -5'
14604 3' -55 NC_003521.1 + 86107 0.72 0.783243
Target:  5'- cUGCAGcCGCuGGA---UGGUGUUCUCCu -3'
miRNA:   3'- -ACGUC-GUGuCCUuguGCCACGAGAGG- -5'
14604 3' -55 NC_003521.1 + 124649 0.76 0.557504
Target:  5'- cGCGGcCACAGGAGCAgcagcaGGUGCgcaccggcaaguUCUCCu -3'
miRNA:   3'- aCGUC-GUGUCCUUGUg-----CCACG------------AGAGG- -5'
14604 3' -55 NC_003521.1 + 52679 0.73 0.726833
Target:  5'- aGCGGCACcGGcAGCgucgGCGGUGCcagccgCUCCa -3'
miRNA:   3'- aCGUCGUGuCC-UUG----UGCCACGa-----GAGG- -5'
14604 3' -55 NC_003521.1 + 123588 0.71 0.789552
Target:  5'- gGCGGCGcCGGGAGCcgccgcggccgucaGCgGGUGCgacaUCUCCa -3'
miRNA:   3'- aCGUCGU-GUCCUUG--------------UG-CCACG----AGAGG- -5'
14604 3' -55 NC_003521.1 + 101777 0.7 0.838188
Target:  5'- cUGCGGCGCcguuuuGGAGCGCaGGUGCagagaaacugggccuUCUCg -3'
miRNA:   3'- -ACGUCGUGu-----CCUUGUG-CCACG---------------AGAGg -5'
14604 3' -55 NC_003521.1 + 91885 0.75 0.59729
Target:  5'- aGCAGCACAcgcgccagcacGGcGCuGCGGUGCUCgaugCCg -3'
miRNA:   3'- aCGUCGUGU-----------CCuUG-UGCCACGAGa---GG- -5'
14604 3' -55 NC_003521.1 + 96898 0.73 0.687532
Target:  5'- aGCAGUugGGGAugcgGCGCGccGUGCccgUCUCCu -3'
miRNA:   3'- aCGUCGugUCCU----UGUGC--CACG---AGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.