Results 1 - 20 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 87753 | 0.66 | 0.959028 |
Target: 5'- -gAGACCagcuGCGgacagguggcGCAGGCCAGGGccaGGUg -3' miRNA: 3'- caUCUGGg---CGCa---------CGUCUGGUCCU---UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 129842 | 0.66 | 0.963463 |
Target: 5'- -gGGGCCCGUGgccgugcccugcuacUGCGacgagugggugacGGCCGGGGAGg -3' miRNA: 3'- caUCUGGGCGC---------------ACGU-------------CUGGUCCUUCg -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 195616 | 0.66 | 0.964437 |
Target: 5'- --cGGCCCGCcagcuggucgcguuGcUGCAGcuccgagGCCAGGGAGUc -3' miRNA: 3'- cauCUGGGCG--------------C-ACGUC-------UGGUCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 116686 | 0.66 | 0.951504 |
Target: 5'- ---uGCCCGUcgucgGUGgAGGCCucGGAAGCg -3' miRNA: 3'- caucUGGGCG-----CACgUCUGGu-CCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 234981 | 0.66 | 0.959028 |
Target: 5'- -gAGGCCUaCGUGCGGucCCAGcGGuAGCg -3' miRNA: 3'- caUCUGGGcGCACGUCu-GGUC-CU-UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 200500 | 0.66 | 0.955374 |
Target: 5'- -gGGACCCGCaGcGgAGGCCGGaucGGAGUg -3' miRNA: 3'- caUCUGGGCG-CaCgUCUGGUC---CUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 221650 | 0.66 | 0.96379 |
Target: 5'- ---cGCCCGCGguguaGcCAGGCCucucuuucgguggucGGGAGGCa -3' miRNA: 3'- caucUGGGCGCa----C-GUCUGG---------------UCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 181394 | 0.66 | 0.955374 |
Target: 5'- -cAGA-CCGUGUccgacggaGguGACCAGGAAGa -3' miRNA: 3'- caUCUgGGCGCA--------CguCUGGUCCUUCg -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 24405 | 0.66 | 0.958672 |
Target: 5'- -cGGGCCCGCGgaGCAuagaaagccagacGGCgCAGGGgccGGCg -3' miRNA: 3'- caUCUGGGCGCa-CGU-------------CUG-GUCCU---UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 87012 | 0.66 | 0.947417 |
Target: 5'- -aGGGCCa-CGUGCuggauGACCAGGAAc- -3' miRNA: 3'- caUCUGGgcGCACGu----CUGGUCCUUcg -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 104238 | 0.66 | 0.962136 |
Target: 5'- cGUGGAgCUGCGcgagcUGCAGGCCuuccucgAGGAgaacuucaAGCa -3' miRNA: 3'- -CAUCUgGGCGC-----ACGUCUGG-------UCCU--------UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 190600 | 0.66 | 0.946147 |
Target: 5'- aGUGGcCCCGCGaccugacuucgcgcUcuucggGCGGACCggacAGGAGGCg -3' miRNA: 3'- -CAUCuGGGCGC--------------A------CGUCUGG----UCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 91853 | 0.66 | 0.959028 |
Target: 5'- ----cCCCuccaggGCG-GCGGACCAGGAcGGCg -3' miRNA: 3'- caucuGGG------CGCaCGUCUGGUCCU-UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 124918 | 0.66 | 0.96043 |
Target: 5'- -gGGGCCCGUGUucagcacgguguacaGCAGuCCGuGGGugGGCa -3' miRNA: 3'- caUCUGGGCGCA---------------CGUCuGGU-CCU--UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 128138 | 0.66 | 0.951106 |
Target: 5'- gGgcGGCCCGCGcucggcgaaggccUGCAGG-CAGGgcGUg -3' miRNA: 3'- -CauCUGGGCGC-------------ACGUCUgGUCCuuCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 66654 | 0.66 | 0.959028 |
Target: 5'- --cGACCuucgugCGCGgccUGCAGGCCcuGGAGCg -3' miRNA: 3'- cauCUGG------GCGC---ACGUCUGGucCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 177180 | 0.66 | 0.965708 |
Target: 5'- -cGGGCacgggguugCGCGUGCGGuacuucuCCAGGcGGCg -3' miRNA: 3'- caUCUGg--------GCGCACGUCu------GGUCCuUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 91527 | 0.66 | 0.951504 |
Target: 5'- gGUGGGCggaGCGU-C-GACCGGGGAGCc -3' miRNA: 3'- -CAUCUGgg-CGCAcGuCUGGUCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 110336 | 0.66 | 0.961799 |
Target: 5'- -aAGGCCaCGCGUGacaggucgccgaAGAgCAGGAGcGCu -3' miRNA: 3'- caUCUGG-GCGCACg-----------UCUgGUCCUU-CG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 222701 | 0.66 | 0.947417 |
Target: 5'- gGUGcGGCCgGgCGUGCGGAucaCCAGGuugAGGCc -3' miRNA: 3'- -CAU-CUGGgC-GCACGUCU---GGUCC---UUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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