miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 3' -52.8 NC_003521.1 + 186650 0.71 0.898866
Target:  5'- cGACGUCGcGcggCGGUGGCGGAGgCGGc -3'
miRNA:   3'- aCUGCAGUaCa--GUCGCCGCUUUgGCU- -5'
14607 3' -52.8 NC_003521.1 + 183800 0.67 0.989476
Target:  5'- gGGCGgCGUGUUcauccgcguGGCGGCGuccguGACCGc -3'
miRNA:   3'- aCUGCaGUACAG---------UCGCCGCu----UUGGCu -5'
14607 3' -52.8 NC_003521.1 + 178856 0.66 0.992884
Target:  5'- cGACGggaaaGUCAGCGggcaguagaGCGAGGCCGc -3'
miRNA:   3'- aCUGCagua-CAGUCGC---------CGCUUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 178175 0.66 0.992884
Target:  5'- gGGCGUCGUaGUagaaguuggaCAG-GGCGgcGCCGAa -3'
miRNA:   3'- aCUGCAGUA-CA----------GUCgCCGCuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 172302 0.74 0.78979
Target:  5'- cGcCGUCcgGUGUCGGUGGCGccAGGCCGGu -3'
miRNA:   3'- aCuGCAG--UACAGUCGCCGC--UUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 172072 0.69 0.95456
Target:  5'- -uGCGUCAggaccGUCAGCGGCGGcgugaugaaguccGugCGGg -3'
miRNA:   3'- acUGCAGUa----CAGUCGCCGCU-------------UugGCU- -5'
14607 3' -52.8 NC_003521.1 + 171664 0.67 0.983094
Target:  5'- gGGCGUCGggagcGUCGGCGGCauga-CGAg -3'
miRNA:   3'- aCUGCAGUa----CAGUCGCCGcuuugGCU- -5'
14607 3' -52.8 NC_003521.1 + 169450 0.7 0.932926
Target:  5'- cGGCGUCGg--CGGCGGCGGGuucgucGCCa- -3'
miRNA:   3'- aCUGCAGUacaGUCGCCGCUU------UGGcu -5'
14607 3' -52.8 NC_003521.1 + 169279 0.76 0.713052
Target:  5'- cGGCGUCGUcuUCGGCGGCGGgcucggugacgucGGCCGGc -3'
miRNA:   3'- aCUGCAGUAc-AGUCGCCGCU-------------UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 168536 0.66 0.995347
Target:  5'- cUGGCGgcCAgcgCGGCGGCGgcGCUGGc -3'
miRNA:   3'- -ACUGCa-GUacaGUCGCCGCuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 168475 0.71 0.927308
Target:  5'- gUGGCugGUCAgGUCgaucaugGGCGGCGAGACgGAg -3'
miRNA:   3'- -ACUG--CAGUaCAG-------UCGCCGCUUUGgCU- -5'
14607 3' -52.8 NC_003521.1 + 165606 0.68 0.971457
Target:  5'- cGAUGUCGUgGUUGGCGGCGu-GCaGAa -3'
miRNA:   3'- aCUGCAGUA-CAGUCGCCGCuuUGgCU- -5'
14607 3' -52.8 NC_003521.1 + 163698 0.67 0.988093
Target:  5'- cGGCGcCAa--CGGCGGCcacGAGGCCGAa -3'
miRNA:   3'- aCUGCaGUacaGUCGCCG---CUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 163309 0.7 0.932926
Target:  5'- cGGCGUgucCAcgGUCAGCGGCGcGAgCGGc -3'
miRNA:   3'- aCUGCA---GUa-CAGUCGCCGCuUUgGCU- -5'
14607 3' -52.8 NC_003521.1 + 161087 0.69 0.965159
Target:  5'- cUGAUGUCgguacgaGUGUCGGCGGCGGugguuuagUCGGg -3'
miRNA:   3'- -ACUGCAG-------UACAGUCGCCGCUuu------GGCU- -5'
14607 3' -52.8 NC_003521.1 + 155248 0.68 0.981117
Target:  5'- gGugGUgGUGgggggcggCGGCGGCGgcGCCu- -3'
miRNA:   3'- aCugCAgUACa-------GUCGCCGCuuUGGcu -5'
14607 3' -52.8 NC_003521.1 + 149739 0.66 0.994618
Target:  5'- cGACGaguggCAgGUCuucuGCGGCGAGGgCGGc -3'
miRNA:   3'- aCUGCa----GUaCAGu---CGCCGCUUUgGCU- -5'
14607 3' -52.8 NC_003521.1 + 148809 0.66 0.991863
Target:  5'- gGACGuUCAUcGUgcGCGGCGAccgccugcccucGGCCGAg -3'
miRNA:   3'- aCUGC-AGUA-CAguCGCCGCU------------UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 148206 0.68 0.981117
Target:  5'- aUGACGUCAgcgaucCGGCGAgGACCGGa -3'
miRNA:   3'- -ACUGCAGUacagucGCCGCU-UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 145855 0.68 0.976652
Target:  5'- -cGCGUCucUGggccCGGCGGCGGGcggcGCCGAc -3'
miRNA:   3'- acUGCAGu-ACa---GUCGCCGCUU----UGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.