miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14610 3' -50.1 NC_003521.1 + 236363 0.66 0.999573
Target:  5'- uCGGGGGCc-GCAggcGGUGCcuUCAGAUCg -3'
miRNA:   3'- uGCCUCUGcuUGU---CCAUGu-AGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 49967 0.66 0.999573
Target:  5'- -aGGAgGACGAgcgGCGGGUGgGUCgagggagccGGGUCg -3'
miRNA:   3'- ugCCU-CUGCU---UGUCCAUgUAG---------UCUAG- -5'
14610 3' -50.1 NC_003521.1 + 182111 0.66 0.99947
Target:  5'- cUGGAGACGGugGGcUGCGUCAa--- -3'
miRNA:   3'- uGCCUCUGCUugUCcAUGUAGUcuag -5'
14610 3' -50.1 NC_003521.1 + 63168 0.66 0.99947
Target:  5'- cCGGAGACuGGACGuGUGCAacgCAGAg- -3'
miRNA:   3'- uGCCUCUG-CUUGUcCAUGUa--GUCUag -5'
14610 3' -50.1 NC_003521.1 + 139512 0.66 0.99947
Target:  5'- -aGGAGACGGuGCAGGUGuuCAUCGa--- -3'
miRNA:   3'- ugCCUCUGCU-UGUCCAU--GUAGUcuag -5'
14610 3' -50.1 NC_003521.1 + 52040 0.66 0.999346
Target:  5'- gGCGGggacccAGACGAGCAGcaGCggCAGAUg -3'
miRNA:   3'- -UGCC------UCUGCUUGUCcaUGuaGUCUAg -5'
14610 3' -50.1 NC_003521.1 + 86656 0.66 0.999346
Target:  5'- gGCGGccGACG-ACAGGUugA--GGAUCa -3'
miRNA:   3'- -UGCCu-CUGCuUGUCCAugUagUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 193274 0.66 0.999346
Target:  5'- uGCGGAG-CGggUgccGGGacggGCGUCGGAgUCg -3'
miRNA:   3'- -UGCCUCuGCuuG---UCCa---UGUAGUCU-AG- -5'
14610 3' -50.1 NC_003521.1 + 72536 0.66 0.999346
Target:  5'- uGCGGAGGCGGcgGCGacGGUGuCGUCGucUCg -3'
miRNA:   3'- -UGCCUCUGCU--UGU--CCAU-GUAGUcuAG- -5'
14610 3' -50.1 NC_003521.1 + 67866 0.66 0.999346
Target:  5'- aGCGGuugGGGCgGAACGGGaggagACGacUCGGAUCu -3'
miRNA:   3'- -UGCC---UCUG-CUUGUCCa----UGU--AGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 35210 0.66 0.999346
Target:  5'- -aGGGGGCGcGCGGG----UCGGAUCg -3'
miRNA:   3'- ugCCUCUGCuUGUCCauguAGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 129120 0.66 0.999346
Target:  5'- -aGGucuCGcGCAGGUACGUCAGGc- -3'
miRNA:   3'- ugCCucuGCuUGUCCAUGUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 132328 0.66 0.999199
Target:  5'- aGCGGuAGACGAagaGCAGG-AUcgCcaGGAUCa -3'
miRNA:   3'- -UGCC-UCUGCU---UGUCCaUGuaG--UCUAG- -5'
14610 3' -50.1 NC_003521.1 + 24264 0.66 0.999097
Target:  5'- uCGGcGGCGAccuggaucucccucgGCAGGUcCAUCGGuAUCg -3'
miRNA:   3'- uGCCuCUGCU---------------UGUCCAuGUAGUC-UAG- -5'
14610 3' -50.1 NC_003521.1 + 69456 0.66 0.999024
Target:  5'- uGCGcGAGGCGcagGGCAGGaucACGUCgaAGGUCa -3'
miRNA:   3'- -UGC-CUCUGC---UUGUCCa--UGUAG--UCUAG- -5'
14610 3' -50.1 NC_003521.1 + 130268 0.66 0.999024
Target:  5'- uACGuGGAUcacccgGAACAGGUGCAUCGGc-- -3'
miRNA:   3'- -UGCcUCUG------CUUGUCCAUGUAGUCuag -5'
14610 3' -50.1 NC_003521.1 + 96594 0.67 0.998817
Target:  5'- cGCGcccauGAUGAGCAGGcagGCGUCGGcgCa -3'
miRNA:   3'- -UGCcu---CUGCUUGUCCa--UGUAGUCuaG- -5'
14610 3' -50.1 NC_003521.1 + 45720 0.67 0.998817
Target:  5'- gGCGG-GGCGucuGCGGG-ACG-CGGGUCa -3'
miRNA:   3'- -UGCCuCUGCu--UGUCCaUGUaGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 32440 0.67 0.998817
Target:  5'- gACGGuuACGGAUGGG--CGUCAGAUa -3'
miRNA:   3'- -UGCCucUGCUUGUCCauGUAGUCUAg -5'
14610 3' -50.1 NC_003521.1 + 91450 0.67 0.998794
Target:  5'- cACGGGgguGACGAggcgcagACAGGUGCG-CAGGa- -3'
miRNA:   3'- -UGCCU---CUGCU-------UGUCCAUGUaGUCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.