Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 236363 | 0.66 | 0.999573 |
Target: 5'- uCGGGGGCc-GCAggcGGUGCcuUCAGAUCg -3' miRNA: 3'- uGCCUCUGcuUGU---CCAUGu-AGUCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 49967 | 0.66 | 0.999573 |
Target: 5'- -aGGAgGACGAgcgGCGGGUGgGUCgagggagccGGGUCg -3' miRNA: 3'- ugCCU-CUGCU---UGUCCAUgUAG---------UCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 182111 | 0.66 | 0.99947 |
Target: 5'- cUGGAGACGGugGGcUGCGUCAa--- -3' miRNA: 3'- uGCCUCUGCUugUCcAUGUAGUcuag -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 63168 | 0.66 | 0.99947 |
Target: 5'- cCGGAGACuGGACGuGUGCAacgCAGAg- -3' miRNA: 3'- uGCCUCUG-CUUGUcCAUGUa--GUCUag -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 139512 | 0.66 | 0.99947 |
Target: 5'- -aGGAGACGGuGCAGGUGuuCAUCGa--- -3' miRNA: 3'- ugCCUCUGCU-UGUCCAU--GUAGUcuag -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 52040 | 0.66 | 0.999346 |
Target: 5'- gGCGGggacccAGACGAGCAGcaGCggCAGAUg -3' miRNA: 3'- -UGCC------UCUGCUUGUCcaUGuaGUCUAg -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 86656 | 0.66 | 0.999346 |
Target: 5'- gGCGGccGACG-ACAGGUugA--GGAUCa -3' miRNA: 3'- -UGCCu-CUGCuUGUCCAugUagUCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 193274 | 0.66 | 0.999346 |
Target: 5'- uGCGGAG-CGggUgccGGGacggGCGUCGGAgUCg -3' miRNA: 3'- -UGCCUCuGCuuG---UCCa---UGUAGUCU-AG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 72536 | 0.66 | 0.999346 |
Target: 5'- uGCGGAGGCGGcgGCGacGGUGuCGUCGucUCg -3' miRNA: 3'- -UGCCUCUGCU--UGU--CCAU-GUAGUcuAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 67866 | 0.66 | 0.999346 |
Target: 5'- aGCGGuugGGGCgGAACGGGaggagACGacUCGGAUCu -3' miRNA: 3'- -UGCC---UCUG-CUUGUCCa----UGU--AGUCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 35210 | 0.66 | 0.999346 |
Target: 5'- -aGGGGGCGcGCGGG----UCGGAUCg -3' miRNA: 3'- ugCCUCUGCuUGUCCauguAGUCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 129120 | 0.66 | 0.999346 |
Target: 5'- -aGGucuCGcGCAGGUACGUCAGGc- -3' miRNA: 3'- ugCCucuGCuUGUCCAUGUAGUCUag -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 132328 | 0.66 | 0.999199 |
Target: 5'- aGCGGuAGACGAagaGCAGG-AUcgCcaGGAUCa -3' miRNA: 3'- -UGCC-UCUGCU---UGUCCaUGuaG--UCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 24264 | 0.66 | 0.999097 |
Target: 5'- uCGGcGGCGAccuggaucucccucgGCAGGUcCAUCGGuAUCg -3' miRNA: 3'- uGCCuCUGCU---------------UGUCCAuGUAGUC-UAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 69456 | 0.66 | 0.999024 |
Target: 5'- uGCGcGAGGCGcagGGCAGGaucACGUCgaAGGUCa -3' miRNA: 3'- -UGC-CUCUGC---UUGUCCa--UGUAG--UCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 130268 | 0.66 | 0.999024 |
Target: 5'- uACGuGGAUcacccgGAACAGGUGCAUCGGc-- -3' miRNA: 3'- -UGCcUCUG------CUUGUCCAUGUAGUCuag -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 96594 | 0.67 | 0.998817 |
Target: 5'- cGCGcccauGAUGAGCAGGcagGCGUCGGcgCa -3' miRNA: 3'- -UGCcu---CUGCUUGUCCa--UGUAGUCuaG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 45720 | 0.67 | 0.998817 |
Target: 5'- gGCGG-GGCGucuGCGGG-ACG-CGGGUCa -3' miRNA: 3'- -UGCCuCUGCu--UGUCCaUGUaGUCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 32440 | 0.67 | 0.998817 |
Target: 5'- gACGGuuACGGAUGGG--CGUCAGAUa -3' miRNA: 3'- -UGCCucUGCUUGUCCauGUAGUCUAg -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 91450 | 0.67 | 0.998794 |
Target: 5'- cACGGGgguGACGAggcgcagACAGGUGCG-CAGGa- -3' miRNA: 3'- -UGCCU---CUGCU-------UGUCCAUGUaGUCUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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