Results 21 - 40 of 66 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 168770 | 0.67 | 0.997575 |
Target: 5'- gAUGGAGAUGAGCaaGGGUcuGCAcCAGGa- -3' miRNA: 3'- -UGCCUCUGCUUG--UCCA--UGUaGUCUag -5' |
|||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 15316 | 0.68 | 0.99605 |
Target: 5'- gACGGcGcCGAGCGGGUG-AUCAGcgCg -3' miRNA: 3'- -UGCCuCuGCUUGUCCAUgUAGUCuaG- -5' |
|||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 201082 | 0.69 | 0.991833 |
Target: 5'- gACGGAGggGCGAAaggAGGU-CAUCAGAc- -3' miRNA: 3'- -UGCCUC--UGCUUg--UCCAuGUAGUCUag -5' |
|||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 49967 | 0.66 | 0.999573 |
Target: 5'- -aGGAgGACGAgcgGCGGGUGgGUCgagggagccGGGUCg -3' miRNA: 3'- ugCCU-CUGCU---UGUCCAUgUAG---------UCUAG- -5' |
|||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 132328 | 0.66 | 0.999199 |
Target: 5'- aGCGGuAGACGAagaGCAGG-AUcgCcaGGAUCa -3' miRNA: 3'- -UGCC-UCUGCU---UGUCCaUGuaG--UCUAG- -5' |
|||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 150102 | 0.67 | 0.997575 |
Target: 5'- uGCGG-GAacaGAGCGGGUACcuagGGAUCa -3' miRNA: 3'- -UGCCuCUg--CUUGUCCAUGuag-UCUAG- -5' |
|||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 52759 | 0.69 | 0.991833 |
Target: 5'- -gGGAGACGAGCGGcucUACcgCGGcAUCg -3' miRNA: 3'- ugCCUCUGCUUGUCc--AUGuaGUC-UAG- -5' |
|||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 130268 | 0.66 | 0.999024 |
Target: 5'- uACGuGGAUcacccgGAACAGGUGCAUCGGc-- -3' miRNA: 3'- -UGCcUCUG------CUUGUCCAUGUAGUCuag -5' |
|||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 175388 | 0.7 | 0.987946 |
Target: 5'- gACGGGGACccauGAcccggcGCAGGUGgGUCAGGg- -3' miRNA: 3'- -UGCCUCUG----CU------UGUCCAUgUAGUCUag -5' |
|||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 91450 | 0.67 | 0.998794 |
Target: 5'- cACGGGgguGACGAggcgcagACAGGUGCG-CAGGa- -3' miRNA: 3'- -UGCCU---CUGCU-------UGUCCAUGUaGUCUag -5' |
|||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 177907 | 0.7 | 0.986374 |
Target: 5'- aGCGG-GGCGAGCGGGaggGCGUC--GUCg -3' miRNA: 3'- -UGCCuCUGCUUGUCCa--UGUAGucUAG- -5' |
|||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 172731 | 0.68 | 0.997133 |
Target: 5'- uUGGAGACcAGCGGGUugAgguUgAGAUCc -3' miRNA: 3'- uGCCUCUGcUUGUCCAugU---AgUCUAG- -5' |
|||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 208270 | 0.68 | 0.995395 |
Target: 5'- cAUGGAgagcucgaugacGACGAGCGGGUcUAUCGcGAUCc -3' miRNA: 3'- -UGCCU------------CUGCUUGUCCAuGUAGU-CUAG- -5' |
|||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 52040 | 0.66 | 0.999346 |
Target: 5'- gGCGGggacccAGACGAGCAGcaGCggCAGAUg -3' miRNA: 3'- -UGCC------UCUGCUUGUCcaUGuaGUCUAg -5' |
|||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 63168 | 0.66 | 0.99947 |
Target: 5'- cCGGAGACuGGACGuGUGCAacgCAGAg- -3' miRNA: 3'- uGCCUCUG-CUUGUcCAUGUa--GUCUag -5' |
|||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 146369 | 0.68 | 0.995395 |
Target: 5'- cACGG-GGCGGuucCGGGUACAg-GGAUCc -3' miRNA: 3'- -UGCCuCUGCUu--GUCCAUGUagUCUAG- -5' |
|||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 76990 | 0.67 | 0.997575 |
Target: 5'- gGCGGcGAUGGGCAGGcacgGCAUCAu--- -3' miRNA: 3'- -UGCCuCUGCUUGUCCa---UGUAGUcuag -5' |
|||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 214045 | 0.68 | 0.996628 |
Target: 5'- cCGGuGGcCGGACAGGUaacugaACAUgAGGUCc -3' miRNA: 3'- uGCCuCU-GCUUGUCCA------UGUAgUCUAG- -5' |
|||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 67866 | 0.66 | 0.999346 |
Target: 5'- aGCGGuugGGGCgGAACGGGaggagACGacUCGGAUCu -3' miRNA: 3'- -UGCC---UCUG-CUUGUCCa----UGU--AGUCUAG- -5' |
|||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 72536 | 0.66 | 0.999346 |
Target: 5'- uGCGGAGGCGGcgGCGacGGUGuCGUCGucUCg -3' miRNA: 3'- -UGCCUCUGCU--UGU--CCAU-GUAGUcuAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home