miRNA display CGI


Results 21 - 40 of 382 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14612 5' -59.7 NC_003521.1 + 224168 0.67 0.806641
Target:  5'- aGGUGuuGAgcaucucGGCCCGAaaGCgGUCGCCGCg -3'
miRNA:   3'- -UCAC--CU-------UCGGGCUg-CGgCAGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 224016 0.71 0.613056
Target:  5'- cAGcGGcGGGCCCGgcggucggggcggGCGCCGUCGCC-CCu -3'
miRNA:   3'- -UCaCC-UUCGGGC-------------UGCGGCAGUGGcGG- -5'
14612 5' -59.7 NC_003521.1 + 223796 0.71 0.632264
Target:  5'- cGUGGGccgccagacgacgGGCCUGcgcCGCCGcCACCGCg -3'
miRNA:   3'- uCACCU-------------UCGGGCu--GCGGCaGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 223741 0.72 0.567251
Target:  5'- aGGUcGAAGCCCaaauccucccacucGucguccucgcugucgGCGCCGUUACCGCCg -3'
miRNA:   3'- -UCAcCUUCGGG--------------C---------------UGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 223008 0.7 0.642832
Target:  5'- cGGUGGggGUcgUCGucCGCCGgucgCACgGCCa -3'
miRNA:   3'- -UCACCuuCG--GGCu-GCGGCa---GUGgCGG- -5'
14612 5' -59.7 NC_003521.1 + 222656 0.68 0.799117
Target:  5'- uGUGGuu-UCCGAaGCgGUCACCGUCg -3'
miRNA:   3'- uCACCuucGGGCUgCGgCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 221929 0.66 0.882256
Target:  5'- cGG-GGcuGCCgCGGCGCCucguccucGUCGCUGCUc -3'
miRNA:   3'- -UCaCCuuCGG-GCUGCGG--------CAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 221747 0.66 0.874902
Target:  5'- aAGcGGAAcgacagcgucagcGUCUG-CGCCG-CGCCGCCg -3'
miRNA:   3'- -UCaCCUU-------------CGGGCuGCGGCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 221079 1.12 0.001667
Target:  5'- aAGUGGAAGCCCGACGCCGUCACCGCCa -3'
miRNA:   3'- -UCACCUUCGGGCUGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 220522 0.66 0.868712
Target:  5'- cGUGGAGGUCCaGGuCuCCGUCACguuccucuCGCCc -3'
miRNA:   3'- uCACCUUCGGG-CU-GcGGCAGUG--------GCGG- -5'
14612 5' -59.7 NC_003521.1 + 218896 0.68 0.799117
Target:  5'- -----cAGCCCGAgGCCG-C-CCGCCa -3'
miRNA:   3'- ucaccuUCGGGCUgCGGCaGuGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 217547 0.7 0.681117
Target:  5'- --aGGAAGCggUGcACGUCGUCGCCGUCa -3'
miRNA:   3'- ucaCCUUCGg-GC-UGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 217029 0.7 0.662017
Target:  5'- --gGGAGGUgUCGAagGCCGUCACgGCCa -3'
miRNA:   3'- ucaCCUUCG-GGCUg-CGGCAGUGgCGG- -5'
14612 5' -59.7 NC_003521.1 + 216536 0.66 0.854419
Target:  5'- --aGGAAGCgauaCCGAuggaccUGCCGagggaauccaggUCGCCGCCg -3'
miRNA:   3'- ucaCCUUCG----GGCU------GCGGC------------AGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 216360 0.73 0.516843
Target:  5'- gGGUGuGAGGCCCGugGuCCGcgCGgaccuguuccgagcCCGCCg -3'
miRNA:   3'- -UCAC-CUUCGGGCugC-GGCa-GU--------------GGCGG- -5'
14612 5' -59.7 NC_003521.1 + 215748 0.74 0.448377
Target:  5'- --aGG-AGCCCGACGaCgCGUUGCCGCUg -3'
miRNA:   3'- ucaCCuUCGGGCUGC-G-GCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 215443 0.66 0.874902
Target:  5'- -cUGGGAGCaggguguCCGGCGCCGaggaaccaagUCACacauaGCCu -3'
miRNA:   3'- ucACCUUCG-------GGCUGCGGC----------AGUGg----CGG- -5'
14612 5' -59.7 NC_003521.1 + 215166 0.67 0.816498
Target:  5'- cGUGGAccagcacgaucugccGCCUGAUGUCGuggUCACgCGCCa -3'
miRNA:   3'- uCACCUu--------------CGGGCUGCGGC---AGUG-GCGG- -5'
14612 5' -59.7 NC_003521.1 + 214995 0.68 0.764444
Target:  5'- gGGUGcGAGCCagCGGCGUCucguaacgCACCGCCa -3'
miRNA:   3'- -UCACcUUCGG--GCUGCGGca------GUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 214269 0.69 0.709482
Target:  5'- ------cGCCCuGACGCCGUCGCUGgCa -3'
miRNA:   3'- ucaccuuCGGG-CUGCGGCAGUGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.