Results 1 - 20 of 288 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14613 | 5' | -60.8 | NC_003521.1 | + | 28385 | 0.66 | 0.831664 |
Target: 5'- gUGGCaCGUGUcGCGACGccuggccaucaUGGgCCUGCu -3' miRNA: 3'- gACCG-GCGCGuCGCUGU-----------ACCaGGGCG- -5' |
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14613 | 5' | -60.8 | NC_003521.1 | + | 31865 | 0.66 | 0.831664 |
Target: 5'- -cGGCgGCGCGGUG-CGagcGGUaCCGCa -3' miRNA: 3'- gaCCGgCGCGUCGCuGUa--CCAgGGCG- -5' |
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14613 | 5' | -60.8 | NC_003521.1 | + | 104203 | 0.66 | 0.831664 |
Target: 5'- gUGGCCGauuacgugcugcUGCAGCccagcgagGACGUGGagCUGCg -3' miRNA: 3'- gACCGGC------------GCGUCG--------CUGUACCagGGCG- -5' |
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14613 | 5' | -60.8 | NC_003521.1 | + | 30226 | 0.66 | 0.831664 |
Target: 5'- -cGGCCGUugGCGucGCGcuGCA-GGUCCgCGCg -3' miRNA: 3'- gaCCGGCG--CGU--CGC--UGUaCCAGG-GCG- -5' |
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14613 | 5' | -60.8 | NC_003521.1 | + | 116079 | 0.66 | 0.831664 |
Target: 5'- -aGGCgcagcgaGUGCAGCGGCu--GUCCgCGCg -3' miRNA: 3'- gaCCGg------CGCGUCGCUGuacCAGG-GCG- -5' |
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14613 | 5' | -60.8 | NC_003521.1 | + | 19905 | 0.66 | 0.831664 |
Target: 5'- -cGGCgUGCgGgAGCGGCugGUGGUCCUGg -3' miRNA: 3'- gaCCG-GCG-CgUCGCUG--UACCAGGGCg -5' |
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14613 | 5' | -60.8 | NC_003521.1 | + | 36846 | 0.66 | 0.831664 |
Target: 5'- gCUGuGCCGgGUAGagcaccuGACGUGGgCCgGCa -3' miRNA: 3'- -GAC-CGGCgCGUCg------CUGUACCaGGgCG- -5' |
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14613 | 5' | -60.8 | NC_003521.1 | + | 118929 | 0.66 | 0.831664 |
Target: 5'- -cGGCgUGgGCGGCGGC---GUCCCGUc -3' miRNA: 3'- gaCCG-GCgCGUCGCUGuacCAGGGCG- -5' |
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14613 | 5' | -60.8 | NC_003521.1 | + | 128141 | 0.66 | 0.831664 |
Target: 5'- -cGGcCCGCGCucGGCGAa--GG-CCUGCa -3' miRNA: 3'- gaCC-GGCGCG--UCGCUguaCCaGGGCG- -5' |
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14613 | 5' | -60.8 | NC_003521.1 | + | 74821 | 0.66 | 0.831664 |
Target: 5'- -cGGaCgGCGCcgagcGCGACGgcGUCCCGCc -3' miRNA: 3'- gaCC-GgCGCGu----CGCUGUacCAGGGCG- -5' |
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14613 | 5' | -60.8 | NC_003521.1 | + | 135818 | 0.66 | 0.831664 |
Target: 5'- -gGGagGCGCGGCGACGaacGcUCCCGUg -3' miRNA: 3'- gaCCggCGCGUCGCUGUa--CcAGGGCG- -5' |
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14613 | 5' | -60.8 | NC_003521.1 | + | 133185 | 0.66 | 0.831664 |
Target: 5'- gUGGCgGCcuCGGCGAUcgGGacgaCCGCg -3' miRNA: 3'- gACCGgCGc-GUCGCUGuaCCag--GGCG- -5' |
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14613 | 5' | -60.8 | NC_003521.1 | + | 19830 | 0.66 | 0.831664 |
Target: 5'- gCUGGCCaccuacacguuCGCccGCGACGUGGagCUGCa -3' miRNA: 3'- -GACCGGc----------GCGu-CGCUGUACCagGGCG- -5' |
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14613 | 5' | -60.8 | NC_003521.1 | + | 99291 | 0.66 | 0.83088 |
Target: 5'- uCUGGCUguagaggGCGCAGagcaGGCA-GGUCCgGg -3' miRNA: 3'- -GACCGG-------CGCGUCg---CUGUaCCAGGgCg -5' |
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14613 | 5' | -60.8 | NC_003521.1 | + | 19062 | 0.66 | 0.829306 |
Target: 5'- -cGGCgGCGCGGCG-CAgacgcugacgcugucGUUCCGCu -3' miRNA: 3'- gaCCGgCGCGUCGCuGUac-------------CAGGGCG- -5' |
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14613 | 5' | -60.8 | NC_003521.1 | + | 132690 | 0.66 | 0.826935 |
Target: 5'- -cGGCuCGCGCccggcuggcgggacGCGGCAcUGGUCCaagGCg -3' miRNA: 3'- gaCCG-GCGCGu-------------CGCUGU-ACCAGGg--CG- -5' |
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14613 | 5' | -60.8 | NC_003521.1 | + | 34213 | 0.66 | 0.823751 |
Target: 5'- -gGGCgGCGUAGaCGGCGcccGuGUCgCCGCa -3' miRNA: 3'- gaCCGgCGCGUC-GCUGUa--C-CAG-GGCG- -5' |
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14613 | 5' | -60.8 | NC_003521.1 | + | 206631 | 0.66 | 0.823751 |
Target: 5'- gUGGaCGUGUcGCGACAUGGaCgUGCa -3' miRNA: 3'- gACCgGCGCGuCGCUGUACCaGgGCG- -5' |
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14613 | 5' | -60.8 | NC_003521.1 | + | 140554 | 0.66 | 0.823751 |
Target: 5'- gUGGCUGCuGCGGCGGCGgcGGcgacagCUCGUc -3' miRNA: 3'- gACCGGCG-CGUCGCUGUa-CCa-----GGGCG- -5' |
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14613 | 5' | -60.8 | NC_003521.1 | + | 199462 | 0.66 | 0.823751 |
Target: 5'- aCUGGCgCGCGUAgguGCGACgGUGGaugaCGCg -3' miRNA: 3'- -GACCG-GCGCGU---CGCUG-UACCagg-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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