miRNA display CGI


Results 1 - 20 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14613 5' -60.8 NC_003521.1 + 28385 0.66 0.831664
Target:  5'- gUGGCaCGUGUcGCGACGccuggccaucaUGGgCCUGCu -3'
miRNA:   3'- gACCG-GCGCGuCGCUGU-----------ACCaGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 31865 0.66 0.831664
Target:  5'- -cGGCgGCGCGGUG-CGagcGGUaCCGCa -3'
miRNA:   3'- gaCCGgCGCGUCGCuGUa--CCAgGGCG- -5'
14613 5' -60.8 NC_003521.1 + 104203 0.66 0.831664
Target:  5'- gUGGCCGauuacgugcugcUGCAGCccagcgagGACGUGGagCUGCg -3'
miRNA:   3'- gACCGGC------------GCGUCG--------CUGUACCagGGCG- -5'
14613 5' -60.8 NC_003521.1 + 30226 0.66 0.831664
Target:  5'- -cGGCCGUugGCGucGCGcuGCA-GGUCCgCGCg -3'
miRNA:   3'- gaCCGGCG--CGU--CGC--UGUaCCAGG-GCG- -5'
14613 5' -60.8 NC_003521.1 + 116079 0.66 0.831664
Target:  5'- -aGGCgcagcgaGUGCAGCGGCu--GUCCgCGCg -3'
miRNA:   3'- gaCCGg------CGCGUCGCUGuacCAGG-GCG- -5'
14613 5' -60.8 NC_003521.1 + 19905 0.66 0.831664
Target:  5'- -cGGCgUGCgGgAGCGGCugGUGGUCCUGg -3'
miRNA:   3'- gaCCG-GCG-CgUCGCUG--UACCAGGGCg -5'
14613 5' -60.8 NC_003521.1 + 36846 0.66 0.831664
Target:  5'- gCUGuGCCGgGUAGagcaccuGACGUGGgCCgGCa -3'
miRNA:   3'- -GAC-CGGCgCGUCg------CUGUACCaGGgCG- -5'
14613 5' -60.8 NC_003521.1 + 118929 0.66 0.831664
Target:  5'- -cGGCgUGgGCGGCGGC---GUCCCGUc -3'
miRNA:   3'- gaCCG-GCgCGUCGCUGuacCAGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 128141 0.66 0.831664
Target:  5'- -cGGcCCGCGCucGGCGAa--GG-CCUGCa -3'
miRNA:   3'- gaCC-GGCGCG--UCGCUguaCCaGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 74821 0.66 0.831664
Target:  5'- -cGGaCgGCGCcgagcGCGACGgcGUCCCGCc -3'
miRNA:   3'- gaCC-GgCGCGu----CGCUGUacCAGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 135818 0.66 0.831664
Target:  5'- -gGGagGCGCGGCGACGaacGcUCCCGUg -3'
miRNA:   3'- gaCCggCGCGUCGCUGUa--CcAGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 133185 0.66 0.831664
Target:  5'- gUGGCgGCcuCGGCGAUcgGGacgaCCGCg -3'
miRNA:   3'- gACCGgCGc-GUCGCUGuaCCag--GGCG- -5'
14613 5' -60.8 NC_003521.1 + 19830 0.66 0.831664
Target:  5'- gCUGGCCaccuacacguuCGCccGCGACGUGGagCUGCa -3'
miRNA:   3'- -GACCGGc----------GCGu-CGCUGUACCagGGCG- -5'
14613 5' -60.8 NC_003521.1 + 99291 0.66 0.83088
Target:  5'- uCUGGCUguagaggGCGCAGagcaGGCA-GGUCCgGg -3'
miRNA:   3'- -GACCGG-------CGCGUCg---CUGUaCCAGGgCg -5'
14613 5' -60.8 NC_003521.1 + 19062 0.66 0.829306
Target:  5'- -cGGCgGCGCGGCG-CAgacgcugacgcugucGUUCCGCu -3'
miRNA:   3'- gaCCGgCGCGUCGCuGUac-------------CAGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 132690 0.66 0.826935
Target:  5'- -cGGCuCGCGCccggcuggcgggacGCGGCAcUGGUCCaagGCg -3'
miRNA:   3'- gaCCG-GCGCGu-------------CGCUGU-ACCAGGg--CG- -5'
14613 5' -60.8 NC_003521.1 + 34213 0.66 0.823751
Target:  5'- -gGGCgGCGUAGaCGGCGcccGuGUCgCCGCa -3'
miRNA:   3'- gaCCGgCGCGUC-GCUGUa--C-CAG-GGCG- -5'
14613 5' -60.8 NC_003521.1 + 206631 0.66 0.823751
Target:  5'- gUGGaCGUGUcGCGACAUGGaCgUGCa -3'
miRNA:   3'- gACCgGCGCGuCGCUGUACCaGgGCG- -5'
14613 5' -60.8 NC_003521.1 + 140554 0.66 0.823751
Target:  5'- gUGGCUGCuGCGGCGGCGgcGGcgacagCUCGUc -3'
miRNA:   3'- gACCGGCG-CGUCGCUGUa-CCa-----GGGCG- -5'
14613 5' -60.8 NC_003521.1 + 199462 0.66 0.823751
Target:  5'- aCUGGCgCGCGUAgguGCGACgGUGGaugaCGCg -3'
miRNA:   3'- -GACCG-GCGCGU---CGCUG-UACCagg-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.