miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 3' -60.3 NC_003521.1 + 141479 0.66 0.862909
Target:  5'- ---aGCCGCUucuccGGGCGCGAGGuGcCCAc -3'
miRNA:   3'- ggugCGGCGA-----CCCGUGCUUCcCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 206623 0.66 0.862909
Target:  5'- uCUACGCCGCccuggUGGGCcACGAuaAGcuGGUCa- -3'
miRNA:   3'- -GGUGCGGCG-----ACCCG-UGCU--UC--CCAGgu -5'
14615 3' -60.3 NC_003521.1 + 88184 0.66 0.862909
Target:  5'- aCgGCGUCGCUGaGCAUcAGGuGGUCCu -3'
miRNA:   3'- -GgUGCGGCGACcCGUGcUUC-CCAGGu -5'
14615 3' -60.3 NC_003521.1 + 112789 0.66 0.862909
Target:  5'- gCugGCCGCcuacGGGCACGcgcucuGGGacggCCGc -3'
miRNA:   3'- gGugCGGCGa---CCCGUGCuu----CCCa---GGU- -5'
14615 3' -60.3 NC_003521.1 + 155653 0.66 0.862909
Target:  5'- -aGCGCCguGCUGGGUggcgGCGGAG-GUCUg -3'
miRNA:   3'- ggUGCGG--CGACCCG----UGCUUCcCAGGu -5'
14615 3' -60.3 NC_003521.1 + 24279 0.66 0.855708
Target:  5'- cCCugGCCGCUGcacugugcuGGCucgaGCGAuucGaGGUCCu -3'
miRNA:   3'- -GGugCGGCGAC---------CCG----UGCUu--C-CCAGGu -5'
14615 3' -60.3 NC_003521.1 + 17417 0.66 0.855708
Target:  5'- -gACGCCGCgccgGGGCgccacacggcccGCGucGGGgcgCCGc -3'
miRNA:   3'- ggUGCGGCGa---CCCG------------UGCuuCCCa--GGU- -5'
14615 3' -60.3 NC_003521.1 + 82632 0.66 0.855708
Target:  5'- aCACGCCGCcGG--AgGAGGGcGUCCGc -3'
miRNA:   3'- gGUGCGGCGaCCcgUgCUUCC-CAGGU- -5'
14615 3' -60.3 NC_003521.1 + 149414 0.66 0.855708
Target:  5'- gCACgGUCGCccugUGGGC-CGGgauuugggucgGGGGUCCGg -3'
miRNA:   3'- gGUG-CGGCG----ACCCGuGCU-----------UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 95261 0.66 0.855708
Target:  5'- gCCGCaGCaCGUUcuGCACGAAgGGGUCCu -3'
miRNA:   3'- -GGUG-CG-GCGAccCGUGCUU-CCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 184845 0.66 0.851301
Target:  5'- cUCGCGCCGCUGcgacugccgaccccaGGCACaGcAGcGUCCAc -3'
miRNA:   3'- -GGUGCGGCGAC---------------CCGUG-CuUCcCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 58895 0.66 0.848329
Target:  5'- aCCGCaucguaGCC-CUGGGCGCGuuGGGagCCc -3'
miRNA:   3'- -GGUG------CGGcGACCCGUGCuuCCCa-GGu -5'
14615 3' -60.3 NC_003521.1 + 86518 0.66 0.848329
Target:  5'- gCCAUGUCGCcgaUGGGCACGuucuuGGG-Ca- -3'
miRNA:   3'- -GGUGCGGCG---ACCCGUGCuu---CCCaGgu -5'
14615 3' -60.3 NC_003521.1 + 127276 0.66 0.848329
Target:  5'- cUCGCGCUGgUGgucgucccGGCGCGAGGGaUCCc -3'
miRNA:   3'- -GGUGCGGCgAC--------CCGUGCUUCCcAGGu -5'
14615 3' -60.3 NC_003521.1 + 179608 0.66 0.848329
Target:  5'- gCCGCuGCUGCUGcGCgugaugucGCGGAucacGGGUCCAc -3'
miRNA:   3'- -GGUG-CGGCGACcCG--------UGCUU----CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 173038 0.66 0.848329
Target:  5'- gCuCGCCGgUGGGCA-GcuGGGUCUg -3'
miRNA:   3'- gGuGCGGCgACCCGUgCuuCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 187639 0.66 0.848329
Target:  5'- gCGCGCCGCUGG-CcaucuucaucgGCGAGGGcGgCCGc -3'
miRNA:   3'- gGUGCGGCGACCcG-----------UGCUUCC-CaGGU- -5'
14615 3' -60.3 NC_003521.1 + 197834 0.66 0.846081
Target:  5'- aCACgGCCGUcugcaggucgucggUGGGCGcCGgcGGGUCg- -3'
miRNA:   3'- gGUG-CGGCG--------------ACCCGU-GCuuCCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 209549 0.66 0.840777
Target:  5'- -uGCGCCcgGCgGGGUggcgGCGAcgguggcgGGGGUCCGg -3'
miRNA:   3'- ggUGCGG--CGaCCCG----UGCU--------UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 13188 0.66 0.840777
Target:  5'- aCCAggcgUGCCGCUcGGGCcgccguguUGGAGGG-CCGa -3'
miRNA:   3'- -GGU----GCGGCGA-CCCGu-------GCUUCCCaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.