miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 3' -60.3 NC_003521.1 + 115324 0.68 0.733525
Target:  5'- aCCACGaCGCUGGGCcugauggagaccaagAUGAAGGG-Cg- -3'
miRNA:   3'- -GGUGCgGCGACCCG---------------UGCUUCCCaGgu -5'
14615 3' -60.3 NC_003521.1 + 155551 0.69 0.701853
Target:  5'- uCCACGUCaGCcGGcGCGCGGAGcGGguagCCAg -3'
miRNA:   3'- -GGUGCGG-CGaCC-CGUGCUUC-CCa---GGU- -5'
14615 3' -60.3 NC_003521.1 + 211332 0.69 0.654274
Target:  5'- -gGCGgucCCGC-GGGCGCGAgugguuGGGGUCCc -3'
miRNA:   3'- ggUGC---GGCGaCCCGUGCU------UCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 15667 0.72 0.485181
Target:  5'- -aGCGCCGaggUGGuGCGCGAcuGGGUCCGc -3'
miRNA:   3'- ggUGCGGCg--ACC-CGUGCUu-CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 14227 0.67 0.800639
Target:  5'- -gACGCCGCUGGGCuACGccGuGaUCCu -3'
miRNA:   3'- ggUGCGGCGACCCG-UGCuuC-CcAGGu -5'
14615 3' -60.3 NC_003521.1 + 169777 0.68 0.748138
Target:  5'- -gGCGCCGCgcuuUGGGCGCucGAGGGaCUAu -3'
miRNA:   3'- ggUGCGGCG----ACCCGUGc-UUCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 146358 0.69 0.701853
Target:  5'- aCCGCGCCGUacacgGGGCGguucCGGguacAGGGaUCCGc -3'
miRNA:   3'- -GGUGCGGCGa----CCCGU----GCU----UCCC-AGGU- -5'
14615 3' -60.3 NC_003521.1 + 123057 0.72 0.485181
Target:  5'- aCCAUGCUGCUGGGacggcggcgGCGGAGGaGcUCCGu -3'
miRNA:   3'- -GGUGCGGCGACCCg--------UGCUUCC-C-AGGU- -5'
14615 3' -60.3 NC_003521.1 + 70357 0.68 0.748138
Target:  5'- gCCGCGCUagucgGCgacaugacugGGGCGCGAGGGGa--- -3'
miRNA:   3'- -GGUGCGG-----CGa---------CCCGUGCUUCCCaggu -5'
14615 3' -60.3 NC_003521.1 + 98526 0.78 0.244654
Target:  5'- gCGCGCgGCUGGGCcgcugcagcgGCGgcGGGUCCc -3'
miRNA:   3'- gGUGCGgCGACCCG----------UGCuuCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 148874 0.69 0.701853
Target:  5'- cCCuCGCCGCcacgGGGUccgcCGccGGGUCCAc -3'
miRNA:   3'- -GGuGCGGCGa---CCCGu---GCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 192940 0.68 0.739029
Target:  5'- gCCGCGCC-CUGGGaCACu--GGG-CCAu -3'
miRNA:   3'- -GGUGCGGcGACCC-GUGcuuCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 172165 0.69 0.682925
Target:  5'- uCCACGCU-CUGcGGCugGAagauGGGGUCg- -3'
miRNA:   3'- -GGUGCGGcGAC-CCGugCU----UCCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 48599 0.69 0.663849
Target:  5'- cCCGCGgCGCcGGGuCGCaaGAaacAGGGUCCGc -3'
miRNA:   3'- -GGUGCgGCGaCCC-GUG--CU---UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 176540 0.71 0.587182
Target:  5'- gCCGCGCUGC-GGG---GAGGGGUCCu -3'
miRNA:   3'- -GGUGCGGCGaCCCgugCUUCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 38636 0.71 0.568181
Target:  5'- gCGCGCCgGCUGGGUguccCGc-GGGUCCGu -3'
miRNA:   3'- gGUGCGG-CGACCCGu---GCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 1785 0.67 0.808962
Target:  5'- aCgGCGCCGCgaccaGGUcCG-GGGGUCCGg -3'
miRNA:   3'- -GgUGCGGCGac---CCGuGCuUCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 159744 0.67 0.800639
Target:  5'- cCCAuCGCCGCgcgcuucaUGGGCgACGugcuGGGGUUg- -3'
miRNA:   3'- -GGU-GCGGCG--------ACCCG-UGCu---UCCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 167615 0.67 0.766077
Target:  5'- -gGCGCCGCa-GGCGCucGGGGUCg- -3'
miRNA:   3'- ggUGCGGCGacCCGUGcuUCCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 151105 0.68 0.757156
Target:  5'- gUCGgGCCGCUGGGggaugGCGggGGGa--- -3'
miRNA:   3'- -GGUgCGGCGACCCg----UGCuuCCCaggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.