miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14616 3' -57.6 NC_003521.1 + 21913 0.66 0.929802
Target:  5'- uGC-UGAcGCAGUcgagacccuGGCgggCGGCCUCGGg- -3'
miRNA:   3'- -CGuACU-CGUCG---------CCGa--GCUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 85071 0.66 0.929802
Target:  5'- aGCGUGAGCAGCGuCUCG----CGGUa -3'
miRNA:   3'- -CGUACUCGUCGCcGAGCuggaGCCAc -5'
14616 3' -57.6 NC_003521.1 + 61110 0.66 0.929802
Target:  5'- cGCAgcUGAGCGGCgagacGGUgaagcccaacaUCGACCUgcUGGUGc -3'
miRNA:   3'- -CGU--ACUCGUCG-----CCG-----------AGCUGGA--GCCAC- -5'
14616 3' -57.6 NC_003521.1 + 163205 0.66 0.929802
Target:  5'- gGCGgcGGCAGCGGCaguagcuccggCGGCCUgGGa- -3'
miRNA:   3'- -CGUacUCGUCGCCGa----------GCUGGAgCCac -5'
14616 3' -57.6 NC_003521.1 + 218034 0.66 0.929802
Target:  5'- --uUGGGCGGCGGCggCGuCCgcaGGUa -3'
miRNA:   3'- cguACUCGUCGCCGa-GCuGGag-CCAc -5'
14616 3' -57.6 NC_003521.1 + 139460 0.66 0.929802
Target:  5'- uGUAgcGGCAGCGGaaCUCGACCUCcuUGa -3'
miRNA:   3'- -CGUacUCGUCGCC--GAGCUGGAGccAC- -5'
14616 3' -57.6 NC_003521.1 + 80866 0.66 0.929802
Target:  5'- gGC-UGGGUAGCuGGCacu-CCUCGGUGc -3'
miRNA:   3'- -CGuACUCGUCG-CCGagcuGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 199762 0.66 0.929802
Target:  5'- -gAUGAGCAGguugaGGaa-GGCUUCGGUGg -3'
miRNA:   3'- cgUACUCGUCg----CCgagCUGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 190543 0.66 0.924704
Target:  5'- gGCGgcAGCAGCGGCg-GACC-CGGcUGc -3'
miRNA:   3'- -CGUacUCGUCGCCGagCUGGaGCC-AC- -5'
14616 3' -57.6 NC_003521.1 + 85112 0.66 0.924704
Target:  5'- gGCGgcGGCAGCGGCgggCGGcacguagccucCCUCGGc- -3'
miRNA:   3'- -CGUacUCGUCGCCGa--GCU-----------GGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 120841 0.66 0.924704
Target:  5'- cGCAUGucGCc-CGGCUCGucgacgcccAUCUCGGUGc -3'
miRNA:   3'- -CGUACu-CGucGCCGAGC---------UGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 134998 0.66 0.924704
Target:  5'- aGCAgGGGCAggccGUGGCgUCGcccuUCUCGGUGa -3'
miRNA:   3'- -CGUaCUCGU----CGCCG-AGCu---GGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 74577 0.66 0.919386
Target:  5'- gGCGacgGAGCGGCGGCgcggCGuCCcgCGGc- -3'
miRNA:   3'- -CGUa--CUCGUCGCCGa---GCuGGa-GCCac -5'
14616 3' -57.6 NC_003521.1 + 37204 0.66 0.919386
Target:  5'- aGCcgGGGgAccGCGGUuaggCGGCCUCGGg- -3'
miRNA:   3'- -CGuaCUCgU--CGCCGa---GCUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 136055 0.66 0.918296
Target:  5'- uGCGaccUGGGCAGCGGCUgCGcgcucaucuccacGCuggagggCUCGGUGu -3'
miRNA:   3'- -CGU---ACUCGUCGCCGA-GC-------------UG-------GAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 220505 0.66 0.913848
Target:  5'- ---aGAGCAGCaGCguggUGGCCUCcuGGUGc -3'
miRNA:   3'- cguaCUCGUCGcCGa---GCUGGAG--CCAC- -5'
14616 3' -57.6 NC_003521.1 + 103646 0.66 0.913848
Target:  5'- aGCggGGGCAGCucGGCggCGGCCgcugCGGc- -3'
miRNA:   3'- -CGuaCUCGUCG--CCGa-GCUGGa---GCCac -5'
14616 3' -57.6 NC_003521.1 + 165566 0.66 0.913848
Target:  5'- uGCAUGuGCAGcCGGCcCu-CCUCGGc- -3'
miRNA:   3'- -CGUACuCGUC-GCCGaGcuGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 96991 0.66 0.913848
Target:  5'- cGCAgaGGGCGGCGcGCaCGAUCUCGcUGg -3'
miRNA:   3'- -CGUa-CUCGUCGC-CGaGCUGGAGCcAC- -5'
14616 3' -57.6 NC_003521.1 + 226367 0.66 0.913848
Target:  5'- cGCggGAGCGGCGGCUgaCGccGCCgcaGGg- -3'
miRNA:   3'- -CGuaCUCGUCGCCGA--GC--UGGag-CCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.