miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14616 3' -57.6 NC_003521.1 + 184487 0.68 0.846853
Target:  5'- -gGUGuGCGcccugcGCGGC-CGcGCCUCGGUGg -3'
miRNA:   3'- cgUACuCGU------CGCCGaGC-UGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 179049 0.67 0.86907
Target:  5'- cGCcgGAGcCGGCGGCg-GuCC-CGGUGa -3'
miRNA:   3'- -CGuaCUC-GUCGCCGagCuGGaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 175429 0.66 0.90809
Target:  5'- cGCGucUGAGUGGCGuGCUCGGCguacgaUCGGc- -3'
miRNA:   3'- -CGU--ACUCGUCGC-CGAGCUGg-----AGCCac -5'
14616 3' -57.6 NC_003521.1 + 171612 0.68 0.861854
Target:  5'- ---cGAGCGGCGGCgggagugccgcCGACgUCGGg- -3'
miRNA:   3'- cguaCUCGUCGCCGa----------GCUGgAGCCac -5'
14616 3' -57.6 NC_003521.1 + 167141 0.71 0.715302
Target:  5'- aGCucuUGAGCAGCGcCUUGggcGCCUCGGg- -3'
miRNA:   3'- -CGu--ACUCGUCGCcGAGC---UGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 165566 0.66 0.913848
Target:  5'- uGCAUGuGCAGcCGGCcCu-CCUCGGc- -3'
miRNA:   3'- -CGUACuCGUC-GCCGaGcuGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 164210 0.69 0.789026
Target:  5'- gGCG-GGGCGGCGGUgguagcggCGGCUggaCGGUGg -3'
miRNA:   3'- -CGUaCUCGUCGCCGa-------GCUGGa--GCCAC- -5'
14616 3' -57.6 NC_003521.1 + 163205 0.66 0.929802
Target:  5'- gGCGgcGGCAGCGGCaguagcuccggCGGCCUgGGa- -3'
miRNA:   3'- -CGUacUCGUCGCCGa----------GCUGGAgCCac -5'
14616 3' -57.6 NC_003521.1 + 160279 0.74 0.539909
Target:  5'- uCAUGAGCGGCcugGGCUCcGCCggcaaggCGGUGg -3'
miRNA:   3'- cGUACUCGUCG---CCGAGcUGGa------GCCAC- -5'
14616 3' -57.6 NC_003521.1 + 152677 0.66 0.90809
Target:  5'- uGCGUcAGCAGCcGCUCcGCggCUCGGUGc -3'
miRNA:   3'- -CGUAcUCGUCGcCGAGcUG--GAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 145904 0.68 0.839079
Target:  5'- gGCggGAGCAGCGGCgguucgcaaaCGGCCUUcgaGGa- -3'
miRNA:   3'- -CGuaCUCGUCGCCGa---------GCUGGAG---CCac -5'
14616 3' -57.6 NC_003521.1 + 145588 0.69 0.789026
Target:  5'- gGCAcGAcGCGGCGGCcgUGGCCUCGcUGc -3'
miRNA:   3'- -CGUaCU-CGUCGCCGa-GCUGGAGCcAC- -5'
14616 3' -57.6 NC_003521.1 + 145243 0.72 0.660944
Target:  5'- uCGUGAGCGGCuGCcugcagggcgccuccUCGGCCUCGGc- -3'
miRNA:   3'- cGUACUCGUCGcCG---------------AGCUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 140044 0.66 0.913848
Target:  5'- cCAUGAGCGGCaGGaa-GGCCUCGuUGc -3'
miRNA:   3'- cGUACUCGUCG-CCgagCUGGAGCcAC- -5'
14616 3' -57.6 NC_003521.1 + 139460 0.66 0.929802
Target:  5'- uGUAgcGGCAGCGGaaCUCGACCUCcuUGa -3'
miRNA:   3'- -CGUacUCGUCGCC--GAGCUGGAGccAC- -5'
14616 3' -57.6 NC_003521.1 + 138826 0.71 0.666825
Target:  5'- cGCcUGAugGCGGCGGCUaCGGCCUgCGGc- -3'
miRNA:   3'- -CGuACU--CGUCGCCGA-GCUGGA-GCCac -5'
14616 3' -57.6 NC_003521.1 + 136491 0.69 0.806313
Target:  5'- aGCuUGAGCAgGUGGUUgaCcACCUCGGUGu -3'
miRNA:   3'- -CGuACUCGU-CGCCGA--GcUGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 136055 0.66 0.918296
Target:  5'- uGCGaccUGGGCAGCGGCUgCGcgcucaucuccacGCuggagggCUCGGUGu -3'
miRNA:   3'- -CGU---ACUCGUCGCCGA-GC-------------UG-------GAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 134998 0.66 0.924704
Target:  5'- aGCAgGGGCAggccGUGGCgUCGcccuUCUCGGUGa -3'
miRNA:   3'- -CGUaCUCGU----CGCCG-AGCu---GGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 131318 0.67 0.86907
Target:  5'- ---cGAGCAGCGGCcggcgCGACCacUCGcUGg -3'
miRNA:   3'- cguaCUCGUCGCCGa----GCUGG--AGCcAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.