miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 5' -63.3 NC_003521.1 + 240464 0.68 0.530692
Target:  5'- cAGCGguCGCAGGcGcCGCCUCCgGCaGCUCAc -3'
miRNA:   3'- -UCGU--GCGUCC-C-GUGGAGGaCG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 240036 0.7 0.441616
Target:  5'- cGGgGCGCcGGGCGguCCUCCgccgaugGCGCCUg -3'
miRNA:   3'- -UCgUGCGuCCCGU--GGAGGa------CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 239842 0.67 0.596729
Target:  5'- cGGCccaGCGGGaGCagaccgccgGCCUCUcguUGCGCCCAc -3'
miRNA:   3'- -UCGug-CGUCC-CG---------UGGAGG---ACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 233541 0.66 0.644683
Target:  5'- cGCGuaauCGUAGGGgGCCUagUGCGUCCGu -3'
miRNA:   3'- uCGU----GCGUCCCgUGGAggACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 228063 0.66 0.654274
Target:  5'- cGCACGCGcGGGUcccagcucACgUCCgagGCGCCgGa -3'
miRNA:   3'- uCGUGCGU-CCCG--------UGgAGGa--CGCGGgU- -5'
14617 5' -63.3 NC_003521.1 + 224527 0.67 0.577664
Target:  5'- aAGC-CGCcGGGCcgguaggcACC-CCgGCGCCCAg -3'
miRNA:   3'- -UCGuGCGuCCCG--------UGGaGGaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 224290 0.72 0.353473
Target:  5'- uGCACGCAGGGUccguugcgcuccaGCCgagCCgaGCGCCgCAg -3'
miRNA:   3'- uCGUGCGUCCCG-------------UGGa--GGa-CGCGG-GU- -5'
14617 5' -63.3 NC_003521.1 + 223155 0.67 0.615884
Target:  5'- gGGuUACGCAGGGcCACCgug-GUGCCCc -3'
miRNA:   3'- -UC-GUGCGUCCC-GUGGaggaCGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 222971 1.07 0.00123
Target:  5'- cAGCACGCAGGGCACCUCCUGCGCCCAc -3'
miRNA:   3'- -UCGUGCGUCCCGUGGAGGACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 222652 0.72 0.325598
Target:  5'- aGGCGCGCA--GCGCCUCCacGCuGCCCAg -3'
miRNA:   3'- -UCGUGCGUccCGUGGAGGa-CG-CGGGU- -5'
14617 5' -63.3 NC_003521.1 + 219146 0.68 0.558736
Target:  5'- gAGaCAgGCAGGGUACCagCagGCGCCgCAg -3'
miRNA:   3'- -UC-GUgCGUCCCGUGGagGa-CGCGG-GU- -5'
14617 5' -63.3 NC_003521.1 + 218626 0.66 0.654274
Target:  5'- cAGCGCGCGGcGGUaagcgGCCacggCCggcgGCGCCUc -3'
miRNA:   3'- -UCGUGCGUC-CCG-----UGGa---GGa---CGCGGGu -5'
14617 5' -63.3 NC_003521.1 + 217234 0.72 0.332587
Target:  5'- gAGgAUGCAGGccaGCACC-CCcGCGCCCAc -3'
miRNA:   3'- -UCgUGCGUCC---CGUGGaGGaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 216363 0.68 0.557794
Target:  5'- cGCugGCcaggcagagcagaAGGGCuGCCUCggGCGUCCAc -3'
miRNA:   3'- uCGugCG-------------UCCCG-UGGAGgaCGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 212654 0.7 0.408409
Target:  5'- gAGCAUGCAGGGUAUCagCaUGC-CCCAg -3'
miRNA:   3'- -UCGUGCGUCCCGUGGagG-ACGcGGGU- -5'
14617 5' -63.3 NC_003521.1 + 211135 0.67 0.615884
Target:  5'- gAGgACGCAGcGGaucauCCUCCaGuCGCCCAu -3'
miRNA:   3'- -UCgUGCGUC-CCgu---GGAGGaC-GCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 205838 0.7 0.43317
Target:  5'- cGCugGCcccGGagACCUUCUGCGCCCGc -3'
miRNA:   3'- uCGugCGuc-CCg-UGGAGGACGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 202552 0.67 0.606298
Target:  5'- uGCGCGCcggccuccuGGGGCugCUgacCCUGgGCCg- -3'
miRNA:   3'- uCGUGCG---------UCCCGugGA---GGACgCGGgu -5'
14617 5' -63.3 NC_003521.1 + 201386 0.69 0.503176
Target:  5'- cGGCGCcgggcucggccgGCAGcGGCAUUUUCUcgGCGCCCAa -3'
miRNA:   3'- -UCGUG------------CGUC-CCGUGGAGGA--CGCGGGU- -5'
14617 5' -63.3 NC_003521.1 + 201275 0.7 0.416564
Target:  5'- uGGCcgGCGuCGGGGcCACCgaCCUGCGCCa- -3'
miRNA:   3'- -UCG--UGC-GUCCC-GUGGa-GGACGCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.