Results 1 - 20 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14618 | 3' | -59.9 | NC_003521.1 | + | 56260 | 0.66 | 0.854432 |
Target: 5'- aGGCAgGCCGGCaGGCagagguuggaCUCgCAGGccagCAUCg -3' miRNA: 3'- -UCGUgCGGCUG-CCG----------GAG-GUCCa---GUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 92271 | 0.66 | 0.854432 |
Target: 5'- cGC-UGCCGcuacCGGCCggagCC-GGUCGUCa -3' miRNA: 3'- uCGuGCGGCu---GCCGGa---GGuCCAGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 174497 | 0.66 | 0.854432 |
Target: 5'- uGC-UGCCaGGCGGCCUCCAcGGcUUggAUCa -3' miRNA: 3'- uCGuGCGG-CUGCCGGAGGU-CC-AG--UAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 207955 | 0.66 | 0.854432 |
Target: 5'- cGGCGCGggcgccaaaCCGAuCGGCCUCCAGa----- -3' miRNA: 3'- -UCGUGC---------GGCU-GCCGGAGGUCcaguag -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 135875 | 0.66 | 0.854432 |
Target: 5'- cGGCACGaccuucgaguaaCCGACGGCgUCgCGcucGUCGUCa -3' miRNA: 3'- -UCGUGC------------GGCUGCCGgAG-GUc--CAGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 49982 | 0.66 | 0.854432 |
Target: 5'- gGGUggGUCGAgGGag-CCGGGUCGUCc -3' miRNA: 3'- -UCGugCGGCUgCCggaGGUCCAGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 198218 | 0.66 | 0.854432 |
Target: 5'- cGGCGcCGCCGGCGGCCgu--GGUa--- -3' miRNA: 3'- -UCGU-GCGGCUGCCGGagguCCAguag -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 145387 | 0.66 | 0.854432 |
Target: 5'- cGGUGCG-CGACGGCCUgggCCuGcUCAUCg -3' miRNA: 3'- -UCGUGCgGCUGCCGGA---GGuCcAGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 60782 | 0.66 | 0.854432 |
Target: 5'- cGGCAUGCUG-CGGCuUUCCGacGGUCccGUCu -3' miRNA: 3'- -UCGUGCGGCuGCCG-GAGGU--CCAG--UAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 22459 | 0.66 | 0.85369 |
Target: 5'- cGGCACGCCuGGCucacgguGGCCUgCCuGGUgAUg -3' miRNA: 3'- -UCGUGCGG-CUG-------CCGGA-GGuCCAgUAg -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 223588 | 0.66 | 0.85369 |
Target: 5'- cGGCGCGCCuccaccuCGGCCUCCGagaccucGGccucCGUCu -3' miRNA: 3'- -UCGUGCGGcu-----GCCGGAGGU-------CCa---GUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 62576 | 0.66 | 0.849952 |
Target: 5'- cAGCaACGCCGcCGccuaccagugcgagaGCCUCCAcgaGGUgGUCa -3' miRNA: 3'- -UCG-UGCGGCuGC---------------CGGAGGU---CCAgUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 116649 | 0.66 | 0.849952 |
Target: 5'- cAGCuACGCCGGCcucucGCuCUCCAGccgccgcuguugcccGUCGUCg -3' miRNA: 3'- -UCG-UGCGGCUGc----CG-GAGGUC---------------CAGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 149306 | 0.66 | 0.846929 |
Target: 5'- gAGCGCGaCGacGCGGCCgCCGuGGUC-UCa -3' miRNA: 3'- -UCGUGCgGC--UGCCGGaGGU-CCAGuAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 31617 | 0.66 | 0.846929 |
Target: 5'- cAGCugGCagggccaccGCGGCCgacggUgGGGUCAUCu -3' miRNA: 3'- -UCGugCGgc-------UGCCGGa----GgUCCAGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 31672 | 0.66 | 0.846929 |
Target: 5'- aGGCGCaGCuCGGCGuuCUCCAGGUgAa- -3' miRNA: 3'- -UCGUG-CG-GCUGCcgGAGGUCCAgUag -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 108525 | 0.66 | 0.846929 |
Target: 5'- cGUugGCuuCGACGGCgaCCuGGUCAc- -3' miRNA: 3'- uCGugCG--GCUGCCGgaGGuCCAGUag -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 98433 | 0.66 | 0.846929 |
Target: 5'- cGGCcaGgGCCG-CGGCCUCCuGGgcuaCGUUg -3' miRNA: 3'- -UCG--UgCGGCuGCCGGAGGuCCa---GUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 120546 | 0.66 | 0.846929 |
Target: 5'- cGGCG-GCCGGCGGUC-CCGGGg---- -3' miRNA: 3'- -UCGUgCGGCUGCCGGaGGUCCaguag -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 169168 | 0.66 | 0.846929 |
Target: 5'- uGGUGCGCCGcuccaacuCGGCCUC--GGUCuUCa -3' miRNA: 3'- -UCGUGCGGCu-------GCCGGAGguCCAGuAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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