miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14618 3' -59.9 NC_003521.1 + 56260 0.66 0.854432
Target:  5'- aGGCAgGCCGGCaGGCagagguuggaCUCgCAGGccagCAUCg -3'
miRNA:   3'- -UCGUgCGGCUG-CCG----------GAG-GUCCa---GUAG- -5'
14618 3' -59.9 NC_003521.1 + 92271 0.66 0.854432
Target:  5'- cGC-UGCCGcuacCGGCCggagCC-GGUCGUCa -3'
miRNA:   3'- uCGuGCGGCu---GCCGGa---GGuCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 174497 0.66 0.854432
Target:  5'- uGC-UGCCaGGCGGCCUCCAcGGcUUggAUCa -3'
miRNA:   3'- uCGuGCGG-CUGCCGGAGGU-CC-AG--UAG- -5'
14618 3' -59.9 NC_003521.1 + 207955 0.66 0.854432
Target:  5'- cGGCGCGggcgccaaaCCGAuCGGCCUCCAGa----- -3'
miRNA:   3'- -UCGUGC---------GGCU-GCCGGAGGUCcaguag -5'
14618 3' -59.9 NC_003521.1 + 135875 0.66 0.854432
Target:  5'- cGGCACGaccuucgaguaaCCGACGGCgUCgCGcucGUCGUCa -3'
miRNA:   3'- -UCGUGC------------GGCUGCCGgAG-GUc--CAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 49982 0.66 0.854432
Target:  5'- gGGUggGUCGAgGGag-CCGGGUCGUCc -3'
miRNA:   3'- -UCGugCGGCUgCCggaGGUCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 198218 0.66 0.854432
Target:  5'- cGGCGcCGCCGGCGGCCgu--GGUa--- -3'
miRNA:   3'- -UCGU-GCGGCUGCCGGagguCCAguag -5'
14618 3' -59.9 NC_003521.1 + 145387 0.66 0.854432
Target:  5'- cGGUGCG-CGACGGCCUgggCCuGcUCAUCg -3'
miRNA:   3'- -UCGUGCgGCUGCCGGA---GGuCcAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 60782 0.66 0.854432
Target:  5'- cGGCAUGCUG-CGGCuUUCCGacGGUCccGUCu -3'
miRNA:   3'- -UCGUGCGGCuGCCG-GAGGU--CCAG--UAG- -5'
14618 3' -59.9 NC_003521.1 + 22459 0.66 0.85369
Target:  5'- cGGCACGCCuGGCucacgguGGCCUgCCuGGUgAUg -3'
miRNA:   3'- -UCGUGCGG-CUG-------CCGGA-GGuCCAgUAg -5'
14618 3' -59.9 NC_003521.1 + 223588 0.66 0.85369
Target:  5'- cGGCGCGCCuccaccuCGGCCUCCGagaccucGGccucCGUCu -3'
miRNA:   3'- -UCGUGCGGcu-----GCCGGAGGU-------CCa---GUAG- -5'
14618 3' -59.9 NC_003521.1 + 62576 0.66 0.849952
Target:  5'- cAGCaACGCCGcCGccuaccagugcgagaGCCUCCAcgaGGUgGUCa -3'
miRNA:   3'- -UCG-UGCGGCuGC---------------CGGAGGU---CCAgUAG- -5'
14618 3' -59.9 NC_003521.1 + 116649 0.66 0.849952
Target:  5'- cAGCuACGCCGGCcucucGCuCUCCAGccgccgcuguugcccGUCGUCg -3'
miRNA:   3'- -UCG-UGCGGCUGc----CG-GAGGUC---------------CAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 149306 0.66 0.846929
Target:  5'- gAGCGCGaCGacGCGGCCgCCGuGGUC-UCa -3'
miRNA:   3'- -UCGUGCgGC--UGCCGGaGGU-CCAGuAG- -5'
14618 3' -59.9 NC_003521.1 + 31617 0.66 0.846929
Target:  5'- cAGCugGCagggccaccGCGGCCgacggUgGGGUCAUCu -3'
miRNA:   3'- -UCGugCGgc-------UGCCGGa----GgUCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 31672 0.66 0.846929
Target:  5'- aGGCGCaGCuCGGCGuuCUCCAGGUgAa- -3'
miRNA:   3'- -UCGUG-CG-GCUGCcgGAGGUCCAgUag -5'
14618 3' -59.9 NC_003521.1 + 108525 0.66 0.846929
Target:  5'- cGUugGCuuCGACGGCgaCCuGGUCAc- -3'
miRNA:   3'- uCGugCG--GCUGCCGgaGGuCCAGUag -5'
14618 3' -59.9 NC_003521.1 + 98433 0.66 0.846929
Target:  5'- cGGCcaGgGCCG-CGGCCUCCuGGgcuaCGUUg -3'
miRNA:   3'- -UCG--UgCGGCuGCCGGAGGuCCa---GUAG- -5'
14618 3' -59.9 NC_003521.1 + 120546 0.66 0.846929
Target:  5'- cGGCG-GCCGGCGGUC-CCGGGg---- -3'
miRNA:   3'- -UCGUgCGGCUGCCGGaGGUCCaguag -5'
14618 3' -59.9 NC_003521.1 + 169168 0.66 0.846929
Target:  5'- uGGUGCGCCGcuccaacuCGGCCUC--GGUCuUCa -3'
miRNA:   3'- -UCGUGCGGCu-------GCCGGAGguCCAGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.