miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14618 3' -59.9 NC_003521.1 + 83 0.67 0.784617
Target:  5'- cGGCGgGCCGGcCGGUCggacguguuucgggCCggcGGGUCGUCg -3'
miRNA:   3'- -UCGUgCGGCU-GCCGGa-------------GG---UCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 4140 0.66 0.815219
Target:  5'- gAGCGgGCCGGCGGCuCUCCccuuccccAGGa---- -3'
miRNA:   3'- -UCGUgCGGCUGCCG-GAGG--------UCCaguag -5'
14618 3' -59.9 NC_003521.1 + 12036 0.71 0.534294
Target:  5'- cGCACGUC-ACGGCCUguugcaCCuggAGGUCAUCu -3'
miRNA:   3'- uCGUGCGGcUGCCGGA------GG---UCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 12244 0.71 0.553216
Target:  5'- gGGCACGCCGACaaCCUCaAGGgCGUCu -3'
miRNA:   3'- -UCGUGCGGCUGccGGAGgUCCaGUAG- -5'
14618 3' -59.9 NC_003521.1 + 18129 0.68 0.754241
Target:  5'- cGCACGCC--CGGCCgcaCCgAGGUCGa- -3'
miRNA:   3'- uCGUGCGGcuGCCGGa--GG-UCCAGUag -5'
14618 3' -59.9 NC_003521.1 + 18584 0.67 0.789838
Target:  5'- gAGCGCGCuCGacugguuccuGCGGCCcagCCGcGGUCAg- -3'
miRNA:   3'- -UCGUGCG-GC----------UGCCGGa--GGU-CCAGUag -5'
14618 3' -59.9 NC_003521.1 + 22459 0.66 0.85369
Target:  5'- cGGCACGCCuGGCucacgguGGCCUgCCuGGUgAUg -3'
miRNA:   3'- -UCGUGCGG-CUG-------CCGGA-GGuCCAgUAg -5'
14618 3' -59.9 NC_003521.1 + 24432 0.71 0.562752
Target:  5'- cGGCGCagggGCCGGCGGgCUCggaaCAGGUCcgCg -3'
miRNA:   3'- -UCGUG----CGGCUGCCgGAG----GUCCAGuaG- -5'
14618 3' -59.9 NC_003521.1 + 24557 0.67 0.763305
Target:  5'- gAGCugGCgcuacuacuCGGCGGCCUCCucGUCc-- -3'
miRNA:   3'- -UCGugCG---------GCUGCCGGAGGucCAGuag -5'
14618 3' -59.9 NC_003521.1 + 27210 0.67 0.789838
Target:  5'- uGCGCGgCGACcGCCaccccaacagCCuGGUCAUCg -3'
miRNA:   3'- uCGUGCgGCUGcCGGa---------GGuCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 27424 0.68 0.735827
Target:  5'- cGCACGUa---GGCCUCCAGG-CAg- -3'
miRNA:   3'- uCGUGCGgcugCCGGAGGUCCaGUag -5'
14618 3' -59.9 NC_003521.1 + 27523 0.66 0.83925
Target:  5'- cGGCccgagGCGCCcacgguggcguaGACGGUCUCCAccGUCGUCc -3'
miRNA:   3'- -UCG-----UGCGG------------CUGCCGGAGGUc-CAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 30837 0.68 0.754241
Target:  5'- cGGgACGCUGGUGGCCgUCUGGGcCGUCc -3'
miRNA:   3'- -UCgUGCGGCUGCCGG-AGGUCCaGUAG- -5'
14618 3' -59.9 NC_003521.1 + 31617 0.66 0.846929
Target:  5'- cAGCugGCagggccaccGCGGCCgacggUgGGGUCAUCu -3'
miRNA:   3'- -UCGugCGgc-------UGCCGGa----GgUCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 31672 0.66 0.846929
Target:  5'- aGGCGCaGCuCGGCGuuCUCCAGGUgAa- -3'
miRNA:   3'- -UCGUG-CG-GCUGCcgGAGGUCCAgUag -5'
14618 3' -59.9 NC_003521.1 + 34155 0.66 0.83925
Target:  5'- -aCGCGCaCGAaGGCCUUgAGGUCGc- -3'
miRNA:   3'- ucGUGCG-GCUgCCGGAGgUCCAGUag -5'
14618 3' -59.9 NC_003521.1 + 35816 0.68 0.753328
Target:  5'- cGGCACGCCGucguuaGCgGGUCUCCcgcaucgggaucgAGGUCGcUCu -3'
miRNA:   3'- -UCGUGCGGC------UG-CCGGAGG-------------UCCAGU-AG- -5'
14618 3' -59.9 NC_003521.1 + 38460 0.66 0.831401
Target:  5'- gAGCAgGUCGGCGGCCgu-GGGaCGUUg -3'
miRNA:   3'- -UCGUgCGGCUGCCGGaggUCCaGUAG- -5'
14618 3' -59.9 NC_003521.1 + 38634 0.7 0.630409
Target:  5'- aGGCGCGCCGGCugGGUgUCCcgcGGGUCcgUu -3'
miRNA:   3'- -UCGUGCGGCUG--CCGgAGG---UCCAGuaG- -5'
14618 3' -59.9 NC_003521.1 + 40174 0.75 0.355139
Target:  5'- cGGCGCGuuGGCGuGCCggUCCAGGUUAa- -3'
miRNA:   3'- -UCGUGCggCUGC-CGG--AGGUCCAGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.