miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14618 3' -59.9 NC_003521.1 + 34155 0.66 0.83925
Target:  5'- -aCGCGCaCGAaGGCCUUgAGGUCGc- -3'
miRNA:   3'- ucGUGCG-GCUgCCGGAGgUCCAGUag -5'
14618 3' -59.9 NC_003521.1 + 204296 0.66 0.823388
Target:  5'- cGGCAUGCCGACGaCCggCGGGUgAc- -3'
miRNA:   3'- -UCGUGCGGCUGCcGGagGUCCAgUag -5'
14618 3' -59.9 NC_003521.1 + 100147 0.66 0.823388
Target:  5'- gGGaAgGCCGugGGgCUCUugAGGUCGUUg -3'
miRNA:   3'- -UCgUgCGGCugCCgGAGG--UCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 88421 0.66 0.83925
Target:  5'- uGCACGaaGGCGcugcgcGUCUCCAGGgagaCGUCg -3'
miRNA:   3'- uCGUGCggCUGC------CGGAGGUCCa---GUAG- -5'
14618 3' -59.9 NC_003521.1 + 167030 0.66 0.823388
Target:  5'- cGGCgACGauGACGGCCagUCCGuGGUCAc- -3'
miRNA:   3'- -UCG-UGCggCUGCCGG--AGGU-CCAGUag -5'
14618 3' -59.9 NC_003521.1 + 168552 0.66 0.83925
Target:  5'- cGGCgGCGCUGGCGGgCUgCGGGUa--- -3'
miRNA:   3'- -UCG-UGCGGCUGCCgGAgGUCCAguag -5'
14618 3' -59.9 NC_003521.1 + 4140 0.66 0.815219
Target:  5'- gAGCGgGCCGGCGGCuCUCCccuuccccAGGa---- -3'
miRNA:   3'- -UCGUgCGGCUGCCG-GAGG--------UCCaguag -5'
14618 3' -59.9 NC_003521.1 + 85615 0.66 0.83925
Target:  5'- gGGCGCGaaGAgGGCCgagAGGUCGUg -3'
miRNA:   3'- -UCGUGCggCUgCCGGaggUCCAGUAg -5'
14618 3' -59.9 NC_003521.1 + 177960 0.66 0.842342
Target:  5'- uGCACGCCGuCaGCUUaucguguaccaccugCCGGGUCAg- -3'
miRNA:   3'- uCGUGCGGCuGcCGGA---------------GGUCCAGUag -5'
14618 3' -59.9 NC_003521.1 + 133988 0.66 0.831401
Target:  5'- cGCugGCCG-CGGCCa--AGGcucUCAUCu -3'
miRNA:   3'- uCGugCGGCuGCCGGaggUCC---AGUAG- -5'
14618 3' -59.9 NC_003521.1 + 153113 0.66 0.83925
Target:  5'- gGGCGCGCgCGACGGCag-CAGG-CGg- -3'
miRNA:   3'- -UCGUGCG-GCUGCCGgagGUCCaGUag -5'
14618 3' -59.9 NC_003521.1 + 238687 0.66 0.831401
Target:  5'- gAGCAgGUCGGCGGCCgu-GGGaCGUUg -3'
miRNA:   3'- -UCGUgCGGCUGCCGGaggUCCaGUAG- -5'
14618 3' -59.9 NC_003521.1 + 207955 0.66 0.854432
Target:  5'- cGGCGCGggcgccaaaCCGAuCGGCCUCCAGa----- -3'
miRNA:   3'- -UCGUGC---------GGCU-GCCGGAGGUCcaguag -5'
14618 3' -59.9 NC_003521.1 + 214353 0.66 0.831401
Target:  5'- gAGCGCGCaGGCGGUgCUCCcAGGcCAc- -3'
miRNA:   3'- -UCGUGCGgCUGCCG-GAGG-UCCaGUag -5'
14618 3' -59.9 NC_003521.1 + 110544 0.66 0.83925
Target:  5'- aGGCGgGCCGAUGcaCCuguUCCGGGUgAUCc -3'
miRNA:   3'- -UCGUgCGGCUGCc-GG---AGGUCCAgUAG- -5'
14618 3' -59.9 NC_003521.1 + 27523 0.66 0.83925
Target:  5'- cGGCccgagGCGCCcacgguggcguaGACGGUCUCCAccGUCGUCc -3'
miRNA:   3'- -UCG-----UGCGG------------CUGCCGGAGGUc-CAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 180775 0.66 0.83925
Target:  5'- cAGCcauCCGGCGGCUUuuGGGUCcUCg -3'
miRNA:   3'- -UCGugcGGCUGCCGGAggUCCAGuAG- -5'
14618 3' -59.9 NC_003521.1 + 77721 0.66 0.823388
Target:  5'- uGUugGCgaCGGCGGCCUCgGuGGgcggCGUCu -3'
miRNA:   3'- uCGugCG--GCUGCCGGAGgU-CCa---GUAG- -5'
14618 3' -59.9 NC_003521.1 + 108525 0.66 0.846929
Target:  5'- cGUugGCuuCGACGGCgaCCuGGUCAc- -3'
miRNA:   3'- uCGugCG--GCUGCCGgaGGuCCAGUag -5'
14618 3' -59.9 NC_003521.1 + 226445 0.66 0.844643
Target:  5'- uAGCGCGCCagcucguccagguuGugGGCCaccagcaCCAGGUacugGUCg -3'
miRNA:   3'- -UCGUGCGG--------------CugCCGGa------GGUCCAg---UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.