miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14618 3' -59.9 NC_003521.1 + 100147 0.66 0.823388
Target:  5'- gGGaAgGCCGugGGgCUCUugAGGUCGUUg -3'
miRNA:   3'- -UCgUgCGGCugCCgGAGG--UCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 167030 0.66 0.823388
Target:  5'- cGGCgACGauGACGGCCagUCCGuGGUCAc- -3'
miRNA:   3'- -UCG-UGCggCUGCCGG--AGGU-CCAGUag -5'
14618 3' -59.9 NC_003521.1 + 169168 0.66 0.846929
Target:  5'- uGGUGCGCCGcuccaacuCGGCCUC--GGUCuUCa -3'
miRNA:   3'- -UCGUGCGGCu-------GCCGGAGguCCAGuAG- -5'
14618 3' -59.9 NC_003521.1 + 22459 0.66 0.85369
Target:  5'- cGGCACGCCuGGCucacgguGGCCUgCCuGGUgAUg -3'
miRNA:   3'- -UCGUGCGG-CUG-------CCGGA-GGuCCAgUAg -5'
14618 3' -59.9 NC_003521.1 + 120546 0.66 0.846929
Target:  5'- cGGCG-GCCGGCGGUC-CCGGGg---- -3'
miRNA:   3'- -UCGUgCGGCUGCCGGaGGUCCaguag -5'
14618 3' -59.9 NC_003521.1 + 164483 0.66 0.815219
Target:  5'- uGGUGCGCaaGACGGCCUgCgAGuUCGUCa -3'
miRNA:   3'- -UCGUGCGg-CUGCCGGA-GgUCcAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 49982 0.66 0.854432
Target:  5'- gGGUggGUCGAgGGag-CCGGGUCGUCc -3'
miRNA:   3'- -UCGugCGGCUgCCggaGGUCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 160334 0.66 0.815219
Target:  5'- gGGCgGCGCgG-UGGCCUCC--GUCGUCg -3'
miRNA:   3'- -UCG-UGCGgCuGCCGGAGGucCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 187638 0.66 0.831401
Target:  5'- cGCGCGCCGcUGGCCaUCU---UCAUCg -3'
miRNA:   3'- uCGUGCGGCuGCCGG-AGGuccAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 116649 0.66 0.849952
Target:  5'- cAGCuACGCCGGCcucucGCuCUCCAGccgccgcuguugcccGUCGUCg -3'
miRNA:   3'- -UCG-UGCGGCUGc----CG-GAGGUC---------------CAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 145387 0.66 0.854432
Target:  5'- cGGUGCG-CGACGGCCUgggCCuGcUCAUCg -3'
miRNA:   3'- -UCGUGCgGCUGCCGGA---GGuCcAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 38460 0.66 0.831401
Target:  5'- gAGCAgGUCGGCGGCCgu-GGGaCGUUg -3'
miRNA:   3'- -UCGUgCGGCUGCCGGaggUCCaGUAG- -5'
14618 3' -59.9 NC_003521.1 + 77721 0.66 0.823388
Target:  5'- uGUugGCgaCGGCGGCCUCgGuGGgcggCGUCu -3'
miRNA:   3'- uCGugCG--GCUGCCGGAGgU-CCa---GUAG- -5'
14618 3' -59.9 NC_003521.1 + 4140 0.66 0.815219
Target:  5'- gAGCGgGCCGGCGGCuCUCCccuuccccAGGa---- -3'
miRNA:   3'- -UCGUgCGGCUGCCG-GAGG--------UCCaguag -5'
14618 3' -59.9 NC_003521.1 + 60782 0.66 0.854432
Target:  5'- cGGCAUGCUG-CGGCuUUCCGacGGUCccGUCu -3'
miRNA:   3'- -UCGUGCGGCuGCCG-GAGGU--CCAG--UAG- -5'
14618 3' -59.9 NC_003521.1 + 98433 0.66 0.846929
Target:  5'- cGGCcaGgGCCG-CGGCCUCCuGGgcuaCGUUg -3'
miRNA:   3'- -UCG--UgCGGCuGCCGGAGGuCCa---GUAG- -5'
14618 3' -59.9 NC_003521.1 + 96324 0.66 0.823388
Target:  5'- ---cUGCCGAcaguCGGCgUCCAGGUCcUCc -3'
miRNA:   3'- ucguGCGGCU----GCCGgAGGUCCAGuAG- -5'
14618 3' -59.9 NC_003521.1 + 31617 0.66 0.846929
Target:  5'- cAGCugGCagggccaccGCGGCCgacggUgGGGUCAUCu -3'
miRNA:   3'- -UCGugCGgc-------UGCCGGa----GgUCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 174497 0.66 0.854432
Target:  5'- uGC-UGCCaGGCGGCCUCCAcGGcUUggAUCa -3'
miRNA:   3'- uCGuGCGG-CUGCCGGAGGU-CC-AG--UAG- -5'
14618 3' -59.9 NC_003521.1 + 207955 0.66 0.854432
Target:  5'- cGGCGCGggcgccaaaCCGAuCGGCCUCCAGa----- -3'
miRNA:   3'- -UCGUGC---------GGCU-GCCGGAGGUCcaguag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.