Results 21 - 40 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14618 | 3' | -59.9 | NC_003521.1 | + | 101056 | 0.69 | 0.649846 |
Target: 5'- cGGC-CGCCGACGGCCggaUCCu-GcCGUCg -3' miRNA: 3'- -UCGuGCGGCUGCCGG---AGGucCaGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 238861 | 0.7 | 0.630409 |
Target: 5'- aGGCGCGCCGGCugGGUgUCCcgcGGGUCcgUu -3' miRNA: 3'- -UCGUGCGGCUG--CCGgAGG---UCCAGuaG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 219058 | 0.72 | 0.479073 |
Target: 5'- aGGCACGCC-ACGGCgC-CCAGGUgCAUg -3' miRNA: 3'- -UCGUGCGGcUGCCG-GaGGUCCA-GUAg -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 148432 | 0.73 | 0.470137 |
Target: 5'- cGGcCGCGCCGGCGG-CUCCAGGg---- -3' miRNA: 3'- -UC-GUGCGGCUGCCgGAGGUCCaguag -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 168660 | 0.73 | 0.452526 |
Target: 5'- aGGCAUGCCGACGGCg-CCggAGGUCc-- -3' miRNA: 3'- -UCGUGCGGCUGCCGgaGG--UCCAGuag -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 40174 | 0.75 | 0.355139 |
Target: 5'- cGGCGCGuuGGCGuGCCggUCCAGGUUAa- -3' miRNA: 3'- -UCGUGCggCUGC-CGG--AGGUCCAGUag -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 205031 | 0.76 | 0.312292 |
Target: 5'- cGC-CGCCGuaguCGGCCUUCGGGUCGa- -3' miRNA: 3'- uCGuGCGGCu---GCCGGAGGUCCAGUag -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 165656 | 0.76 | 0.298908 |
Target: 5'- cAGCACGCCGcGCGGCaccaugcgUCCAGG-CAUCc -3' miRNA: 3'- -UCGUGCGGC-UGCCGg-------AGGUCCaGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 70755 | 0.77 | 0.275945 |
Target: 5'- cAGCGCGCCG-CGGCCgaucaCCAgcugcacguggaaauGGUCAUCg -3' miRNA: 3'- -UCGUGCGGCuGCCGGa----GGU---------------CCAGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 86223 | 0.79 | 0.214502 |
Target: 5'- cGGCACGCCGGCGGCCUUgagcuccuugacgugCAGGgcgaaGUCg -3' miRNA: 3'- -UCGUGCGGCUGCCGGAG---------------GUCCag---UAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 102793 | 0.72 | 0.488092 |
Target: 5'- -aCGCGCCGGCGGCCgCCAGcUCGg- -3' miRNA: 3'- ucGUGCGGCUGCCGGaGGUCcAGUag -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 164060 | 0.72 | 0.515607 |
Target: 5'- cGGcCACGgCGACGGUCgCCucggAGGUCGUCg -3' miRNA: 3'- -UC-GUGCgGCUGCCGGaGG----UCCAGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 210900 | 0.7 | 0.620688 |
Target: 5'- uGGCcguCGCCaggcccuuGACGGCCa-CGGGUCGUCg -3' miRNA: 3'- -UCGu--GCGG--------CUGCCGGagGUCCAGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 150444 | 0.7 | 0.620688 |
Target: 5'- gAGCGCGCCcGgGGuCCUCCuGGUCu-- -3' miRNA: 3'- -UCGUGCGGcUgCC-GGAGGuCCAGuag -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 110680 | 0.7 | 0.610976 |
Target: 5'- cAGCGCGUCGGUGGCCUCgagcuugAGGUCGa- -3' miRNA: 3'- -UCGUGCGGCUGCCGGAGg------UCCAGUag -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 53522 | 0.71 | 0.58195 |
Target: 5'- cAGCG-GCCGAUGGUgcuguccgCUCCGGGUCGa- -3' miRNA: 3'- -UCGUgCGGCUGCCG--------GAGGUCCAGUag -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 130633 | 0.71 | 0.58195 |
Target: 5'- cGCACGCCaGCGGCCUCCAc------ -3' miRNA: 3'- uCGUGCGGcUGCCGGAGGUccaguag -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 43860 | 0.71 | 0.572332 |
Target: 5'- aGGCGCcCCGGcCGGCUcCCGGGcCGUCg -3' miRNA: 3'- -UCGUGcGGCU-GCCGGaGGUCCaGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 24432 | 0.71 | 0.562752 |
Target: 5'- cGGCGCagggGCCGGCGGgCUCggaaCAGGUCcgCg -3' miRNA: 3'- -UCGUG----CGGCUGCCgGAG----GUCCAGuaG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 145291 | 0.71 | 0.543728 |
Target: 5'- cGCGCGCCGGCGuCUcgCCGGG-CAUCc -3' miRNA: 3'- uCGUGCGGCUGCcGGa-GGUCCaGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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