miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14618 3' -59.9 NC_003521.1 + 101056 0.69 0.649846
Target:  5'- cGGC-CGCCGACGGCCggaUCCu-GcCGUCg -3'
miRNA:   3'- -UCGuGCGGCUGCCGG---AGGucCaGUAG- -5'
14618 3' -59.9 NC_003521.1 + 24432 0.71 0.562752
Target:  5'- cGGCGCagggGCCGGCGGgCUCggaaCAGGUCcgCg -3'
miRNA:   3'- -UCGUG----CGGCUGCCgGAG----GUCCAGuaG- -5'
14618 3' -59.9 NC_003521.1 + 43860 0.71 0.572332
Target:  5'- aGGCGCcCCGGcCGGCUcCCGGGcCGUCg -3'
miRNA:   3'- -UCGUGcGGCU-GCCGGaGGUCCaGUAG- -5'
14618 3' -59.9 NC_003521.1 + 130633 0.71 0.58195
Target:  5'- cGCACGCCaGCGGCCUCCAc------ -3'
miRNA:   3'- uCGUGCGGcUGCCGGAGGUccaguag -5'
14618 3' -59.9 NC_003521.1 + 53522 0.71 0.58195
Target:  5'- cAGCG-GCCGAUGGUgcuguccgCUCCGGGUCGa- -3'
miRNA:   3'- -UCGUgCGGCUGCCG--------GAGGUCCAGUag -5'
14618 3' -59.9 NC_003521.1 + 110680 0.7 0.610976
Target:  5'- cAGCGCGUCGGUGGCCUCgagcuugAGGUCGa- -3'
miRNA:   3'- -UCGUGCGGCUGCCGGAGg------UCCAGUag -5'
14618 3' -59.9 NC_003521.1 + 150444 0.7 0.620688
Target:  5'- gAGCGCGCCcGgGGuCCUCCuGGUCu-- -3'
miRNA:   3'- -UCGUGCGGcUgCC-GGAGGuCCAGuag -5'
14618 3' -59.9 NC_003521.1 + 210900 0.7 0.620688
Target:  5'- uGGCcguCGCCaggcccuuGACGGCCa-CGGGUCGUCg -3'
miRNA:   3'- -UCGu--GCGG--------CUGCCGGagGUCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 238861 0.7 0.630409
Target:  5'- aGGCGCGCCGGCugGGUgUCCcgcGGGUCcgUu -3'
miRNA:   3'- -UCGUGCGGCUG--CCGgAGG---UCCAGuaG- -5'
14618 3' -59.9 NC_003521.1 + 145291 0.71 0.543728
Target:  5'- cGCGCGCCGGCGuCUcgCCGGG-CAUCc -3'
miRNA:   3'- uCGUGCGGCUGCcGGa-GGUCCaGUAG- -5'
14618 3' -59.9 NC_003521.1 + 164060 0.72 0.515607
Target:  5'- cGGcCACGgCGACGGUCgCCucggAGGUCGUCg -3'
miRNA:   3'- -UC-GUGCgGCUGCCGGaGG----UCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 102793 0.72 0.488092
Target:  5'- -aCGCGCCGGCGGCCgCCAGcUCGg- -3'
miRNA:   3'- ucGUGCGGCUGCCGGaGGUCcAGUag -5'
14618 3' -59.9 NC_003521.1 + 86223 0.79 0.214502
Target:  5'- cGGCACGCCGGCGGCCUUgagcuccuugacgugCAGGgcgaaGUCg -3'
miRNA:   3'- -UCGUGCGGCUGCCGGAG---------------GUCCag---UAG- -5'
14618 3' -59.9 NC_003521.1 + 70755 0.77 0.275945
Target:  5'- cAGCGCGCCG-CGGCCgaucaCCAgcugcacguggaaauGGUCAUCg -3'
miRNA:   3'- -UCGUGCGGCuGCCGGa----GGU---------------CCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 165656 0.76 0.298908
Target:  5'- cAGCACGCCGcGCGGCaccaugcgUCCAGG-CAUCc -3'
miRNA:   3'- -UCGUGCGGC-UGCCGg-------AGGUCCaGUAG- -5'
14618 3' -59.9 NC_003521.1 + 205031 0.76 0.312292
Target:  5'- cGC-CGCCGuaguCGGCCUUCGGGUCGa- -3'
miRNA:   3'- uCGuGCGGCu---GCCGGAGGUCCAGUag -5'
14618 3' -59.9 NC_003521.1 + 40174 0.75 0.355139
Target:  5'- cGGCGCGuuGGCGuGCCggUCCAGGUUAa- -3'
miRNA:   3'- -UCGUGCggCUGC-CGG--AGGUCCAGUag -5'
14618 3' -59.9 NC_003521.1 + 168660 0.73 0.452526
Target:  5'- aGGCAUGCCGACGGCg-CCggAGGUCc-- -3'
miRNA:   3'- -UCGUGCGGCUGCCGgaGG--UCCAGuag -5'
14618 3' -59.9 NC_003521.1 + 148432 0.73 0.470137
Target:  5'- cGGcCGCGCCGGCGG-CUCCAGGg---- -3'
miRNA:   3'- -UC-GUGCGGCUGCCgGAGGUCCaguag -5'
14618 3' -59.9 NC_003521.1 + 219058 0.72 0.479073
Target:  5'- aGGCACGCC-ACGGCgC-CCAGGUgCAUg -3'
miRNA:   3'- -UCGUGCGGcUGCCG-GaGGUCCA-GUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.