Results 1 - 20 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14618 | 3' | -59.9 | NC_003521.1 | + | 106717 | 0.78 | 0.249822 |
Target: 5'- aGGCGCGCagGACGGCCaCCAGGUCc-- -3' miRNA: 3'- -UCGUGCGg-CUGCCGGaGGUCCAGuag -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 137608 | 0.71 | 0.553216 |
Target: 5'- cGcCugGCCGGCGaCCucaUCCAGGUCAUg -3' miRNA: 3'- uC-GugCGGCUGCcGG---AGGUCCAGUAg -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 177744 | 0.71 | 0.58195 |
Target: 5'- cAGCGCGCCGGCGcaGCUguacggggUCGcGGUCGUCg -3' miRNA: 3'- -UCGUGCGGCUGC--CGGa-------GGU-CCAGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 207955 | 0.66 | 0.854432 |
Target: 5'- cGGCGCGggcgccaaaCCGAuCGGCCUCCAGa----- -3' miRNA: 3'- -UCGUGC---------GGCU-GCCGGAGGUCcaguag -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 91192 | 0.74 | 0.41842 |
Target: 5'- gAGCAccuCGCCGGCGGCgUCCAGcGcCGUUu -3' miRNA: 3'- -UCGU---GCGGCUGCCGgAGGUC-CaGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 49831 | 0.73 | 0.443856 |
Target: 5'- cAGUGCGCCgugcaGACGGCCgUCCAGGUgGc- -3' miRNA: 3'- -UCGUGCGG-----CUGCCGG-AGGUCCAgUag -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 152898 | 0.72 | 0.479073 |
Target: 5'- gAGCAUGCCcggcgcGGCGGCCagCCAGGagUCGUUg -3' miRNA: 3'- -UCGUGCGG------CUGCCGGa-GGUCC--AGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 183714 | 0.72 | 0.497189 |
Target: 5'- gAGCugGCCGGCugcuggGGCCUCUAcccGGcCAUCc -3' miRNA: 3'- -UCGugCGGCUG------CCGGAGGU---CCaGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 197828 | 0.71 | 0.534294 |
Target: 5'- cGCGCGacaCGGCcGUCUgCAGGUCGUCg -3' miRNA: 3'- uCGUGCg--GCUGcCGGAgGUCCAGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 59059 | 0.71 | 0.553216 |
Target: 5'- cGgGCGCUGugGGCCUUCucccuGGUgAUCu -3' miRNA: 3'- uCgUGCGGCugCCGGAGGu----CCAgUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 123941 | 0.71 | 0.534294 |
Target: 5'- cGGCGCGCCGccGCaGCCgcgCCacugcgcgcgcAGGUCGUCg -3' miRNA: 3'- -UCGUGCGGC--UGcCGGa--GG-----------UCCAGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 122629 | 0.71 | 0.533354 |
Target: 5'- cGCGCGCuCGGCGGCC-CCgacuuugccggcgGGcGUCGUCu -3' miRNA: 3'- uCGUGCG-GCUGCCGGaGG-------------UC-CAGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 170961 | 0.76 | 0.298908 |
Target: 5'- uGGCGCuGCgCGGCGGCCUCaucggCAGcGUCAUCg -3' miRNA: 3'- -UCGUG-CG-GCUGCCGGAG-----GUC-CAGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 128055 | 0.71 | 0.553216 |
Target: 5'- cAGCAgGCacauGGCGGCCUCCAGaUCGg- -3' miRNA: 3'- -UCGUgCGg---CUGCCGGAGGUCcAGUag -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 94940 | 0.75 | 0.362671 |
Target: 5'- cGC-CGCCGGCGGCCUC---GUCGUCg -3' miRNA: 3'- uCGuGCGGCUGCCGGAGgucCAGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 172112 | 0.72 | 0.497189 |
Target: 5'- gGGCG-GCCGACGGCg-CCAcGGUCAUg -3' miRNA: 3'- -UCGUgCGGCUGCCGgaGGU-CCAGUAg -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 12244 | 0.71 | 0.553216 |
Target: 5'- gGGCACGCCGACaaCCUCaAGGgCGUCu -3' miRNA: 3'- -UCGUGCGGCUGccGGAGgUCCaGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 139756 | 0.71 | 0.553216 |
Target: 5'- cGCGUGCCGACGGCaggaUCC-GGcCGUCg -3' miRNA: 3'- uCGUGCGGCUGCCGg---AGGuCCaGUAG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 188484 | 0.74 | 0.401964 |
Target: 5'- gAGCAgGCCGugGGCCU--GGGUCcgCc -3' miRNA: 3'- -UCGUgCGGCugCCGGAggUCCAGuaG- -5' |
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14618 | 3' | -59.9 | NC_003521.1 | + | 224136 | 0.73 | 0.443856 |
Target: 5'- -cCAgGCCGugGGCCgagucgggCCAGGUCAg- -3' miRNA: 3'- ucGUgCGGCugCCGGa-------GGUCCAGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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