miRNA display CGI


Results 1 - 20 of 165 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14618 3' -59.9 NC_003521.1 + 223040 1.09 0.001894
Target:  5'- cAGCACGCCGACGGCCUCCAGGUCAUCg -3'
miRNA:   3'- -UCGUGCGGCUGCCGGAGGUCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 86223 0.79 0.214502
Target:  5'- cGGCACGCCGGCGGCCUUgagcuccuugacgugCAGGgcgaaGUCg -3'
miRNA:   3'- -UCGUGCGGCUGCCGGAG---------------GUCCag---UAG- -5'
14618 3' -59.9 NC_003521.1 + 106717 0.78 0.249822
Target:  5'- aGGCGCGCagGACGGCCaCCAGGUCc-- -3'
miRNA:   3'- -UCGUGCGg-CUGCCGGaGGUCCAGuag -5'
14618 3' -59.9 NC_003521.1 + 70755 0.77 0.275945
Target:  5'- cAGCGCGCCG-CGGCCgaucaCCAgcugcacguggaaauGGUCAUCg -3'
miRNA:   3'- -UCGUGCGGCuGCCGGa----GGU---------------CCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 170961 0.76 0.298908
Target:  5'- uGGCGCuGCgCGGCGGCCUCaucggCAGcGUCAUCg -3'
miRNA:   3'- -UCGUG-CG-GCUGCCGGAG-----GUC-CAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 165656 0.76 0.298908
Target:  5'- cAGCACGCCGcGCGGCaccaugcgUCCAGG-CAUCc -3'
miRNA:   3'- -UCGUGCGGC-UGCCGg-------AGGUCCaGUAG- -5'
14618 3' -59.9 NC_003521.1 + 205031 0.76 0.312292
Target:  5'- cGC-CGCCGuaguCGGCCUUCGGGUCGa- -3'
miRNA:   3'- uCGuGCGGCu---GCCGGAGGUCCAGUag -5'
14618 3' -59.9 NC_003521.1 + 40174 0.75 0.355139
Target:  5'- cGGCGCGuuGGCGuGCCggUCCAGGUUAa- -3'
miRNA:   3'- -UCGUGCggCUGC-CGG--AGGUCCAGUag -5'
14618 3' -59.9 NC_003521.1 + 94940 0.75 0.362671
Target:  5'- cGC-CGCCGGCGGCCUC---GUCGUCg -3'
miRNA:   3'- uCGuGCGGCUGCCGGAGgucCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 188484 0.74 0.401964
Target:  5'- gAGCAgGCCGugGGCCU--GGGUCcgCc -3'
miRNA:   3'- -UCGUgCGGCugCCGGAggUCCAGuaG- -5'
14618 3' -59.9 NC_003521.1 + 91192 0.74 0.41842
Target:  5'- gAGCAccuCGCCGGCGGCgUCCAGcGcCGUUu -3'
miRNA:   3'- -UCGU---GCGGCUGCCGgAGGUC-CaGUAG- -5'
14618 3' -59.9 NC_003521.1 + 49831 0.73 0.443856
Target:  5'- cAGUGCGCCgugcaGACGGCCgUCCAGGUgGc- -3'
miRNA:   3'- -UCGUGCGG-----CUGCCGG-AGGUCCAgUag -5'
14618 3' -59.9 NC_003521.1 + 224136 0.73 0.443856
Target:  5'- -cCAgGCCGugGGCCgagucgggCCAGGUCAg- -3'
miRNA:   3'- ucGUgCGGCugCCGGa-------GGUCCAGUag -5'
14618 3' -59.9 NC_003521.1 + 168660 0.73 0.452526
Target:  5'- aGGCAUGCCGACGGCg-CCggAGGUCc-- -3'
miRNA:   3'- -UCGUGCGGCUGCCGgaGG--UCCAGuag -5'
14618 3' -59.9 NC_003521.1 + 148432 0.73 0.470137
Target:  5'- cGGcCGCGCCGGCGG-CUCCAGGg---- -3'
miRNA:   3'- -UC-GUGCGGCUGCCgGAGGUCCaguag -5'
14618 3' -59.9 NC_003521.1 + 219058 0.72 0.479073
Target:  5'- aGGCACGCC-ACGGCgC-CCAGGUgCAUg -3'
miRNA:   3'- -UCGUGCGGcUGCCG-GaGGUCCA-GUAg -5'
14618 3' -59.9 NC_003521.1 + 152898 0.72 0.479073
Target:  5'- gAGCAUGCCcggcgcGGCGGCCagCCAGGagUCGUUg -3'
miRNA:   3'- -UCGUGCGG------CUGCCGGa-GGUCC--AGUAG- -5'
14618 3' -59.9 NC_003521.1 + 102793 0.72 0.488092
Target:  5'- -aCGCGCCGGCGGCCgCCAGcUCGg- -3'
miRNA:   3'- ucGUGCGGCUGCCGGaGGUCcAGUag -5'
14618 3' -59.9 NC_003521.1 + 183714 0.72 0.497189
Target:  5'- gAGCugGCCGGCugcuggGGCCUCUAcccGGcCAUCc -3'
miRNA:   3'- -UCGugCGGCUG------CCGGAGGU---CCaGUAG- -5'
14618 3' -59.9 NC_003521.1 + 172112 0.72 0.497189
Target:  5'- gGGCG-GCCGACGGCg-CCAcGGUCAUg -3'
miRNA:   3'- -UCGUgCGGCUGCCGgaGGU-CCAGUAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.