miRNA display CGI


Results 21 - 40 of 165 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14618 3' -59.9 NC_003521.1 + 164060 0.72 0.515607
Target:  5'- cGGcCACGgCGACGGUCgCCucggAGGUCGUCg -3'
miRNA:   3'- -UC-GUGCgGCUGCCGGaGG----UCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 122629 0.71 0.533354
Target:  5'- cGCGCGCuCGGCGGCC-CCgacuuugccggcgGGcGUCGUCu -3'
miRNA:   3'- uCGUGCG-GCUGCCGGaGG-------------UC-CAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 12036 0.71 0.534294
Target:  5'- cGCACGUC-ACGGCCUguugcaCCuggAGGUCAUCu -3'
miRNA:   3'- uCGUGCGGcUGCCGGA------GG---UCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 197828 0.71 0.534294
Target:  5'- cGCGCGacaCGGCcGUCUgCAGGUCGUCg -3'
miRNA:   3'- uCGUGCg--GCUGcCGGAgGUCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 123941 0.71 0.534294
Target:  5'- cGGCGCGCCGccGCaGCCgcgCCacugcgcgcgcAGGUCGUCg -3'
miRNA:   3'- -UCGUGCGGC--UGcCGGa--GG-----------UCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 145291 0.71 0.543728
Target:  5'- cGCGCGCCGGCGuCUcgCCGGG-CAUCc -3'
miRNA:   3'- uCGUGCGGCUGCcGGa-GGUCCaGUAG- -5'
14618 3' -59.9 NC_003521.1 + 12244 0.71 0.553216
Target:  5'- gGGCACGCCGACaaCCUCaAGGgCGUCu -3'
miRNA:   3'- -UCGUGCGGCUGccGGAGgUCCaGUAG- -5'
14618 3' -59.9 NC_003521.1 + 128055 0.71 0.553216
Target:  5'- cAGCAgGCacauGGCGGCCUCCAGaUCGg- -3'
miRNA:   3'- -UCGUgCGg---CUGCCGGAGGUCcAGUag -5'
14618 3' -59.9 NC_003521.1 + 137608 0.71 0.553216
Target:  5'- cGcCugGCCGGCGaCCucaUCCAGGUCAUg -3'
miRNA:   3'- uC-GugCGGCUGCcGG---AGGUCCAGUAg -5'
14618 3' -59.9 NC_003521.1 + 59059 0.71 0.553216
Target:  5'- cGgGCGCUGugGGCCUUCucccuGGUgAUCu -3'
miRNA:   3'- uCgUGCGGCugCCGGAGGu----CCAgUAG- -5'
14618 3' -59.9 NC_003521.1 + 139756 0.71 0.553216
Target:  5'- cGCGUGCCGACGGCaggaUCC-GGcCGUCg -3'
miRNA:   3'- uCGUGCGGCUGCCGg---AGGuCCaGUAG- -5'
14618 3' -59.9 NC_003521.1 + 24432 0.71 0.562752
Target:  5'- cGGCGCagggGCCGGCGGgCUCggaaCAGGUCcgCg -3'
miRNA:   3'- -UCGUG----CGGCUGCCgGAG----GUCCAGuaG- -5'
14618 3' -59.9 NC_003521.1 + 43860 0.71 0.572332
Target:  5'- aGGCGCcCCGGcCGGCUcCCGGGcCGUCg -3'
miRNA:   3'- -UCGUGcGGCU-GCCGGaGGUCCaGUAG- -5'
14618 3' -59.9 NC_003521.1 + 53522 0.71 0.58195
Target:  5'- cAGCG-GCCGAUGGUgcuguccgCUCCGGGUCGa- -3'
miRNA:   3'- -UCGUgCGGCUGCCG--------GAGGUCCAGUag -5'
14618 3' -59.9 NC_003521.1 + 177744 0.71 0.58195
Target:  5'- cAGCGCGCCGGCGcaGCUguacggggUCGcGGUCGUCg -3'
miRNA:   3'- -UCGUGCGGCUGC--CGGa-------GGU-CCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 130633 0.71 0.58195
Target:  5'- cGCACGCCaGCGGCCUCCAc------ -3'
miRNA:   3'- uCGUGCGGcUGCCGGAGGUccaguag -5'
14618 3' -59.9 NC_003521.1 + 88460 0.7 0.591601
Target:  5'- gGGCGCGCCGcccCGGCCggccCCAGaGcagCGUCg -3'
miRNA:   3'- -UCGUGCGGCu--GCCGGa---GGUC-Ca--GUAG- -5'
14618 3' -59.9 NC_003521.1 + 166168 0.7 0.601278
Target:  5'- gAGCGCaggGCCGAgCGGCgCUCCAGGgucCcgCg -3'
miRNA:   3'- -UCGUG---CGGCU-GCCG-GAGGUCCa--GuaG- -5'
14618 3' -59.9 NC_003521.1 + 209897 0.7 0.601278
Target:  5'- cGGCACGgCGACGuGCC-CCAGGaCcgCu -3'
miRNA:   3'- -UCGUGCgGCUGC-CGGaGGUCCaGuaG- -5'
14618 3' -59.9 NC_003521.1 + 110680 0.7 0.610976
Target:  5'- cAGCGCGUCGGUGGCCUCgagcuugAGGUCGa- -3'
miRNA:   3'- -UCGUGCGGCUGCCGGAGg------UCCAGUag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.