miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14618 3' -59.9 NC_003521.1 + 43832 0.67 0.789838
Target:  5'- cAGC-CGCCGcCGGCCg-CGGGccCGUCa -3'
miRNA:   3'- -UCGuGCGGCuGCCGGagGUCCa-GUAG- -5'
14618 3' -59.9 NC_003521.1 + 43860 0.71 0.572332
Target:  5'- aGGCGCcCCGGcCGGCUcCCGGGcCGUCg -3'
miRNA:   3'- -UCGUGcGGCU-GCCGGaGGUCCaGUAG- -5'
14618 3' -59.9 NC_003521.1 + 49831 0.73 0.443856
Target:  5'- cAGUGCGCCgugcaGACGGCCgUCCAGGUgGc- -3'
miRNA:   3'- -UCGUGCGG-----CUGCCGG-AGGUCCAgUag -5'
14618 3' -59.9 NC_003521.1 + 49982 0.66 0.854432
Target:  5'- gGGUggGUCGAgGGag-CCGGGUCGUCc -3'
miRNA:   3'- -UCGugCGGCUgCCggaGGUCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 53522 0.71 0.58195
Target:  5'- cAGCG-GCCGAUGGUgcuguccgCUCCGGGUCGa- -3'
miRNA:   3'- -UCGUgCGGCUGCCG--------GAGGUCCAGUag -5'
14618 3' -59.9 NC_003521.1 + 56260 0.66 0.854432
Target:  5'- aGGCAgGCCGGCaGGCagagguuggaCUCgCAGGccagCAUCg -3'
miRNA:   3'- -UCGUgCGGCUG-CCG----------GAG-GUCCa---GUAG- -5'
14618 3' -59.9 NC_003521.1 + 59059 0.71 0.553216
Target:  5'- cGgGCGCUGugGGCCUUCucccuGGUgAUCu -3'
miRNA:   3'- uCgUGCGGCugCCGGAGGu----CCAgUAG- -5'
14618 3' -59.9 NC_003521.1 + 59731 0.68 0.717089
Target:  5'- cGaCACGCCGGaucUGGCCUUCGGGcCGg- -3'
miRNA:   3'- uC-GUGCGGCU---GCCGGAGGUCCaGUag -5'
14618 3' -59.9 NC_003521.1 + 60782 0.66 0.854432
Target:  5'- cGGCAUGCUG-CGGCuUUCCGacGGUCccGUCu -3'
miRNA:   3'- -UCGUGCGGCuGCCG-GAGGU--CCAG--UAG- -5'
14618 3' -59.9 NC_003521.1 + 61423 0.69 0.698088
Target:  5'- cAGCAUGCgGcaccugagcgaGCGGCUg-CAGGUCAUCc -3'
miRNA:   3'- -UCGUGCGgC-----------UGCCGGagGUCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 62576 0.66 0.849952
Target:  5'- cAGCaACGCCGcCGccuaccagugcgagaGCCUCCAcgaGGUgGUCa -3'
miRNA:   3'- -UCG-UGCGGCuGC---------------CGGAGGU---CCAgUAG- -5'
14618 3' -59.9 NC_003521.1 + 70755 0.77 0.275945
Target:  5'- cAGCGCGCCG-CGGCCgaucaCCAgcugcacguggaaauGGUCAUCg -3'
miRNA:   3'- -UCGUGCGGCuGCCGGa----GGU---------------CCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 73831 0.67 0.772265
Target:  5'- uGGaCGCGCUGACGGCCga-GGGaacgaCGUCa -3'
miRNA:   3'- -UC-GUGCGGCUGCCGGaggUCCa----GUAG- -5'
14618 3' -59.9 NC_003521.1 + 75996 0.67 0.804375
Target:  5'- cGGC-CGCCGguuccuccucccccGCgGGCgCUCCGGGaUCGUCc -3'
miRNA:   3'- -UCGuGCGGC--------------UG-CCG-GAGGUCC-AGUAG- -5'
14618 3' -59.9 NC_003521.1 + 77721 0.66 0.823388
Target:  5'- uGUugGCgaCGGCGGCCUCgGuGGgcggCGUCu -3'
miRNA:   3'- uCGugCG--GCUGCCGGAGgU-CCa---GUAG- -5'
14618 3' -59.9 NC_003521.1 + 84611 0.67 0.781112
Target:  5'- cGGCGuCGgUGACGGCC---AGGUCGUCc -3'
miRNA:   3'- -UCGU-GCgGCUGCCGGaggUCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 85615 0.66 0.83925
Target:  5'- gGGCGCGaaGAgGGCCgagAGGUCGUg -3'
miRNA:   3'- -UCGUGCggCUgCCGGaggUCCAGUAg -5'
14618 3' -59.9 NC_003521.1 + 86223 0.79 0.214502
Target:  5'- cGGCACGCCGGCGGCCUUgagcuccuugacgugCAGGgcgaaGUCg -3'
miRNA:   3'- -UCGUGCGGCUGCCGGAG---------------GUCCag---UAG- -5'
14618 3' -59.9 NC_003521.1 + 88421 0.66 0.83925
Target:  5'- uGCACGaaGGCGcugcgcGUCUCCAGGgagaCGUCg -3'
miRNA:   3'- uCGUGCggCUGC------CGGAGGUCCa---GUAG- -5'
14618 3' -59.9 NC_003521.1 + 88460 0.7 0.591601
Target:  5'- gGGCGCGCCGcccCGGCCggccCCAGaGcagCGUCg -3'
miRNA:   3'- -UCGUGCGGCu--GCCGGa---GGUC-Ca--GUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.