miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14618 3' -59.9 NC_003521.1 + 240632 0.67 0.784617
Target:  5'- cGGCGgGCCGGcCGGUCggacguguuucgggCCggcGGGUCGUCg -3'
miRNA:   3'- -UCGUgCGGCU-GCCGGa-------------GG---UCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 238861 0.7 0.630409
Target:  5'- aGGCGCGCCGGCugGGUgUCCcgcGGGUCcgUu -3'
miRNA:   3'- -UCGUGCGGCUG--CCGgAGG---UCCAGuaG- -5'
14618 3' -59.9 NC_003521.1 + 238687 0.66 0.831401
Target:  5'- gAGCAgGUCGGCGGCCgu-GGGaCGUUg -3'
miRNA:   3'- -UCGUgCGGCUGCCGGaggUCCaGUAG- -5'
14618 3' -59.9 NC_003521.1 + 236478 0.67 0.772265
Target:  5'- gAGCGaacCGCCGGCGGCgguggcgCCAGG-CAUg -3'
miRNA:   3'- -UCGU---GCGGCUGCCGga-----GGUCCaGUAg -5'
14618 3' -59.9 NC_003521.1 + 233174 0.67 0.798437
Target:  5'- cGCGcCGCCGugGCGGCCgCCGuuaccgucGGUCGUUc -3'
miRNA:   3'- uCGU-GCGGC--UGCCGGaGGU--------CCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 226445 0.66 0.844643
Target:  5'- uAGCGCGCCagcucguccagguuGugGGCCaccagcaCCAGGUacugGUCg -3'
miRNA:   3'- -UCGUGCGG--------------CugCCGGa------GGUCCAg---UAG- -5'
14618 3' -59.9 NC_003521.1 + 226071 0.68 0.745079
Target:  5'- aGGCGCGCCc-CGGCCgcggCCGGccCGUCa -3'
miRNA:   3'- -UCGUGCGGcuGCCGGa---GGUCcaGUAG- -5'
14618 3' -59.9 NC_003521.1 + 224136 0.73 0.443856
Target:  5'- -cCAgGCCGugGGCCgagucgggCCAGGUCAg- -3'
miRNA:   3'- ucGUgCGGCugCCGGa-------GGUCCAGUag -5'
14618 3' -59.9 NC_003521.1 + 224094 0.69 0.698088
Target:  5'- cGCGCGCCGGCGGUCgccgaacucgCCGcG-CAUCa -3'
miRNA:   3'- uCGUGCGGCUGCCGGa---------GGUcCaGUAG- -5'
14618 3' -59.9 NC_003521.1 + 223588 0.66 0.85369
Target:  5'- cGGCGCGCCuccaccuCGGCCUCCGagaccucGGccucCGUCu -3'
miRNA:   3'- -UCGUGCGGcu-----GCCGGAGGU-------CCa---GUAG- -5'
14618 3' -59.9 NC_003521.1 + 223040 1.09 0.001894
Target:  5'- cAGCACGCCGACGGCCUCCAGGUCAUCg -3'
miRNA:   3'- -UCGUGCGGCUGCCGGAGGUCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 221710 0.67 0.763305
Target:  5'- gAGCACGCagugguacgUGcCGGCCgUCUGGGUgAUCa -3'
miRNA:   3'- -UCGUGCG---------GCuGCCGG-AGGUCCAgUAG- -5'
14618 3' -59.9 NC_003521.1 + 221701 0.69 0.659549
Target:  5'- uGGUACaCCGGCGGCCcgCCAcccGcGUCGUCu -3'
miRNA:   3'- -UCGUGcGGCUGCCGGa-GGU---C-CAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 219058 0.72 0.479073
Target:  5'- aGGCACGCC-ACGGCgC-CCAGGUgCAUg -3'
miRNA:   3'- -UCGUGCGGcUGCCG-GaGGUCCA-GUAg -5'
14618 3' -59.9 NC_003521.1 + 216636 0.67 0.762403
Target:  5'- gGGCGCGCCGACGccgggaaaGCgaagacuccgcauCUCCGcGGUgGUCg -3'
miRNA:   3'- -UCGUGCGGCUGC--------CG-------------GAGGU-CCAgUAG- -5'
14618 3' -59.9 NC_003521.1 + 214353 0.66 0.831401
Target:  5'- gAGCGCGCaGGCGGUgCUCCcAGGcCAc- -3'
miRNA:   3'- -UCGUGCGgCUGCCG-GAGG-UCCaGUag -5'
14618 3' -59.9 NC_003521.1 + 210900 0.7 0.620688
Target:  5'- uGGCcguCGCCaggcccuuGACGGCCa-CGGGUCGUCg -3'
miRNA:   3'- -UCGu--GCGG--------CUGCCGGagGUCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 210128 0.67 0.798437
Target:  5'- cGCgGCGCCG-CGuuguuauaaGCCUCaugAGGUCAUCg -3'
miRNA:   3'- uCG-UGCGGCuGC---------CGGAGg--UCCAGUAG- -5'
14618 3' -59.9 NC_003521.1 + 209897 0.7 0.601278
Target:  5'- cGGCACGgCGACGuGCC-CCAGGaCcgCu -3'
miRNA:   3'- -UCGUGCgGCUGC-CGGaGGUCCaGuaG- -5'
14618 3' -59.9 NC_003521.1 + 209687 0.68 0.734898
Target:  5'- gAGCACGUaacgcugcuccaCGAacaGGCgCUCCAGGUCcgaggagGUCg -3'
miRNA:   3'- -UCGUGCG------------GCUg--CCG-GAGGUCCAG-------UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.