miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14619 5' -62.2 NC_003521.1 + 223716 0.66 0.788408
Target:  5'- -aCCUCgccggguacgacggCGGGUCcgguggcgggaacgUGGGUCGCCGCcaGCg -3'
miRNA:   3'- agGGAGa-------------GCUCAG--------------ACCCGGCGGCG--CG- -5'
14619 5' -62.2 NC_003521.1 + 12754 0.66 0.78756
Target:  5'- -gCCUCggacgUGAG-CUGGGacCCGCgCGUGCg -3'
miRNA:   3'- agGGAGa----GCUCaGACCC--GGCG-GCGCG- -5'
14619 5' -62.2 NC_003521.1 + 37323 0.66 0.78756
Target:  5'- cUCCUCU-GGGUggGGGCgGUCGCGg -3'
miRNA:   3'- aGGGAGAgCUCAgaCCCGgCGGCGCg -5'
14619 5' -62.2 NC_003521.1 + 203594 0.66 0.78756
Target:  5'- cUCCUCUCcGGUCUccacccccGaGGCCGCCuaacCGCg -3'
miRNA:   3'- aGGGAGAGcUCAGA--------C-CCGGCGGc---GCG- -5'
14619 5' -62.2 NC_003521.1 + 152385 0.66 0.78756
Target:  5'- gCCCUCUacucuaGucaUCUGGcGgUGCCGCGCc -3'
miRNA:   3'- aGGGAGAg-----Cuc-AGACC-CgGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 19650 0.66 0.78756
Target:  5'- cUCCa--UCGuGUgcCUGgGGCUGCUGCGCu -3'
miRNA:   3'- -AGGgagAGCuCA--GAC-CCGGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 13961 0.66 0.78756
Target:  5'- gCCCUCgcugGAGcccugaUGGGCCuGCCcgGCGCg -3'
miRNA:   3'- aGGGAGag--CUCag----ACCCGG-CGG--CGCG- -5'
14619 5' -62.2 NC_003521.1 + 212600 0.66 0.78756
Target:  5'- cUCCgUCagCGAGgggaagCUGGGCgGuuGCGa -3'
miRNA:   3'- -AGGgAGa-GCUCa-----GACCCGgCggCGCg -5'
14619 5' -62.2 NC_003521.1 + 54001 0.66 0.786712
Target:  5'- gCCCaUCUuguugcgCGAG-CUGGaaCCGCCGUGCu -3'
miRNA:   3'- aGGG-AGA-------GCUCaGACCc-GGCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 7169 0.66 0.786712
Target:  5'- gCCCUCguaaUCGAG-CUccaguacGGcGCCGCCGCu- -3'
miRNA:   3'- aGGGAG----AGCUCaGA-------CC-CGGCGGCGcg -5'
14619 5' -62.2 NC_003521.1 + 172991 0.66 0.782451
Target:  5'- gCCUUCU-GGGUCgcgGGGCUcacuugaggggagcaGCCGCGa -3'
miRNA:   3'- aGGGAGAgCUCAGa--CCCGG---------------CGGCGCg -5'
14619 5' -62.2 NC_003521.1 + 30841 0.66 0.779022
Target:  5'- aCgCUggUGGccGUCUGGGCCGuCCGCGg -3'
miRNA:   3'- aGgGAgaGCU--CAGACCCGGC-GGCGCg -5'
14619 5' -62.2 NC_003521.1 + 12602 0.66 0.779022
Target:  5'- uUCCCUUcUGGGaUCgcuucgGGGCCGUggaaCGCGUg -3'
miRNA:   3'- -AGGGAGaGCUC-AGa-----CCCGGCG----GCGCG- -5'
14619 5' -62.2 NC_003521.1 + 221293 0.66 0.779022
Target:  5'- cCCCgaucCUCGGGUCcgaGGGCCaguagucCCGCGa -3'
miRNA:   3'- aGGGa---GAGCUCAGa--CCCGGc------GGCGCg -5'
14619 5' -62.2 NC_003521.1 + 211948 0.66 0.770371
Target:  5'- -aCCUCcgUGAGcUUGGGCgacucgaccgUGCCGCGCc -3'
miRNA:   3'- agGGAGa-GCUCaGACCCG----------GCGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 218665 0.66 0.770371
Target:  5'- gUCCCUCUCcaccGUCUcccgguaagaGGGCgGCgGCGa -3'
miRNA:   3'- -AGGGAGAGcu--CAGA----------CCCGgCGgCGCg -5'
14619 5' -62.2 NC_003521.1 + 53931 0.66 0.770371
Target:  5'- gUCCUcacgcaUCUgGAGacgcugagCUGGGCCgacgaGCCGUGCu -3'
miRNA:   3'- -AGGG------AGAgCUCa-------GACCCGG-----CGGCGCG- -5'
14619 5' -62.2 NC_003521.1 + 98510 0.66 0.7695
Target:  5'- aCCCagUUGcgacgacgcgcgcGG-CUGGGCCGCUGCaGCg -3'
miRNA:   3'- aGGGagAGC-------------UCaGACCCGGCGGCG-CG- -5'
14619 5' -62.2 NC_003521.1 + 150920 0.66 0.761615
Target:  5'- gCCCUUccaCGGcGUgUGGGCCGa-GCGCg -3'
miRNA:   3'- aGGGAGa--GCU-CAgACCCGGCggCGCG- -5'
14619 5' -62.2 NC_003521.1 + 25616 0.66 0.761615
Target:  5'- aCCUUCacCGGG-CUGGcGCUGCUgGCGCg -3'
miRNA:   3'- aGGGAGa-GCUCaGACC-CGGCGG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.