Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14619 | 5' | -62.2 | NC_003521.1 | + | 223716 | 0.66 | 0.788408 |
Target: 5'- -aCCUCgccggguacgacggCGGGUCcgguggcgggaacgUGGGUCGCCGCcaGCg -3' miRNA: 3'- agGGAGa-------------GCUCAG--------------ACCCGGCGGCG--CG- -5' |
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14619 | 5' | -62.2 | NC_003521.1 | + | 203594 | 0.66 | 0.78756 |
Target: 5'- cUCCUCUCcGGUCUccacccccGaGGCCGCCuaacCGCg -3' miRNA: 3'- aGGGAGAGcUCAGA--------C-CCGGCGGc---GCG- -5' |
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14619 | 5' | -62.2 | NC_003521.1 | + | 152385 | 0.66 | 0.78756 |
Target: 5'- gCCCUCUacucuaGucaUCUGGcGgUGCCGCGCc -3' miRNA: 3'- aGGGAGAg-----Cuc-AGACC-CgGCGGCGCG- -5' |
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14619 | 5' | -62.2 | NC_003521.1 | + | 12754 | 0.66 | 0.78756 |
Target: 5'- -gCCUCggacgUGAG-CUGGGacCCGCgCGUGCg -3' miRNA: 3'- agGGAGa----GCUCaGACCC--GGCG-GCGCG- -5' |
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14619 | 5' | -62.2 | NC_003521.1 | + | 212600 | 0.66 | 0.78756 |
Target: 5'- cUCCgUCagCGAGgggaagCUGGGCgGuuGCGa -3' miRNA: 3'- -AGGgAGa-GCUCa-----GACCCGgCggCGCg -5' |
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14619 | 5' | -62.2 | NC_003521.1 | + | 13961 | 0.66 | 0.78756 |
Target: 5'- gCCCUCgcugGAGcccugaUGGGCCuGCCcgGCGCg -3' miRNA: 3'- aGGGAGag--CUCag----ACCCGG-CGG--CGCG- -5' |
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14619 | 5' | -62.2 | NC_003521.1 | + | 37323 | 0.66 | 0.78756 |
Target: 5'- cUCCUCU-GGGUggGGGCgGUCGCGg -3' miRNA: 3'- aGGGAGAgCUCAgaCCCGgCGGCGCg -5' |
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14619 | 5' | -62.2 | NC_003521.1 | + | 19650 | 0.66 | 0.78756 |
Target: 5'- cUCCa--UCGuGUgcCUGgGGCUGCUGCGCu -3' miRNA: 3'- -AGGgagAGCuCA--GAC-CCGGCGGCGCG- -5' |
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14619 | 5' | -62.2 | NC_003521.1 | + | 7169 | 0.66 | 0.786712 |
Target: 5'- gCCCUCguaaUCGAG-CUccaguacGGcGCCGCCGCu- -3' miRNA: 3'- aGGGAG----AGCUCaGA-------CC-CGGCGGCGcg -5' |
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14619 | 5' | -62.2 | NC_003521.1 | + | 54001 | 0.66 | 0.786712 |
Target: 5'- gCCCaUCUuguugcgCGAG-CUGGaaCCGCCGUGCu -3' miRNA: 3'- aGGG-AGA-------GCUCaGACCc-GGCGGCGCG- -5' |
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14619 | 5' | -62.2 | NC_003521.1 | + | 172991 | 0.66 | 0.782451 |
Target: 5'- gCCUUCU-GGGUCgcgGGGCUcacuugaggggagcaGCCGCGa -3' miRNA: 3'- aGGGAGAgCUCAGa--CCCGG---------------CGGCGCg -5' |
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14619 | 5' | -62.2 | NC_003521.1 | + | 221293 | 0.66 | 0.779022 |
Target: 5'- cCCCgaucCUCGGGUCcgaGGGCCaguagucCCGCGa -3' miRNA: 3'- aGGGa---GAGCUCAGa--CCCGGc------GGCGCg -5' |
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14619 | 5' | -62.2 | NC_003521.1 | + | 12602 | 0.66 | 0.779022 |
Target: 5'- uUCCCUUcUGGGaUCgcuucgGGGCCGUggaaCGCGUg -3' miRNA: 3'- -AGGGAGaGCUC-AGa-----CCCGGCG----GCGCG- -5' |
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14619 | 5' | -62.2 | NC_003521.1 | + | 30841 | 0.66 | 0.779022 |
Target: 5'- aCgCUggUGGccGUCUGGGCCGuCCGCGg -3' miRNA: 3'- aGgGAgaGCU--CAGACCCGGC-GGCGCg -5' |
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14619 | 5' | -62.2 | NC_003521.1 | + | 53931 | 0.66 | 0.770371 |
Target: 5'- gUCCUcacgcaUCUgGAGacgcugagCUGGGCCgacgaGCCGUGCu -3' miRNA: 3'- -AGGG------AGAgCUCa-------GACCCGG-----CGGCGCG- -5' |
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14619 | 5' | -62.2 | NC_003521.1 | + | 211948 | 0.66 | 0.770371 |
Target: 5'- -aCCUCcgUGAGcUUGGGCgacucgaccgUGCCGCGCc -3' miRNA: 3'- agGGAGa-GCUCaGACCCG----------GCGGCGCG- -5' |
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14619 | 5' | -62.2 | NC_003521.1 | + | 218665 | 0.66 | 0.770371 |
Target: 5'- gUCCCUCUCcaccGUCUcccgguaagaGGGCgGCgGCGa -3' miRNA: 3'- -AGGGAGAGcu--CAGA----------CCCGgCGgCGCg -5' |
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14619 | 5' | -62.2 | NC_003521.1 | + | 98510 | 0.66 | 0.7695 |
Target: 5'- aCCCagUUGcgacgacgcgcgcGG-CUGGGCCGCUGCaGCg -3' miRNA: 3'- aGGGagAGC-------------UCaGACCCGGCGGCG-CG- -5' |
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14619 | 5' | -62.2 | NC_003521.1 | + | 150920 | 0.66 | 0.761615 |
Target: 5'- gCCCUUccaCGGcGUgUGGGCCGa-GCGCg -3' miRNA: 3'- aGGGAGa--GCU-CAgACCCGGCggCGCG- -5' |
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14619 | 5' | -62.2 | NC_003521.1 | + | 25616 | 0.66 | 0.761615 |
Target: 5'- aCCUUCacCGGG-CUGGcGCUGCUgGCGCg -3' miRNA: 3'- aGGGAGa-GCUCaGACC-CGGCGG-CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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