miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14620 5' -63.3 NC_003521.1 + 204525 0.76 0.213605
Target:  5'- gGGUGCGCC-CCACC-CGGCCUCguuuuucugcuuaCGGGg -3'
miRNA:   3'- -CCGCGCGGaGGUGGaGCCGGAG-------------GCUC- -5'
14620 5' -63.3 NC_003521.1 + 204108 0.7 0.505775
Target:  5'- uGGCgccacuGCGCCUCCACCUgcucgGGCCaggcgCCGGa -3'
miRNA:   3'- -CCG------CGCGGAGGUGGAg----CCGGa----GGCUc -5'
14620 5' -63.3 NC_003521.1 + 200395 0.69 0.51471
Target:  5'- cGGCuccgGCCgCCGCUUCGGCCUCCc-- -3'
miRNA:   3'- -CCGcg--CGGaGGUGGAGCCGGAGGcuc -5'
14620 5' -63.3 NC_003521.1 + 196744 0.66 0.745825
Target:  5'- cGGCgGCGCCUgCACCgucugCuGCC-CCGGc -3'
miRNA:   3'- -CCG-CGCGGAgGUGGa----GcCGGaGGCUc -5'
14620 5' -63.3 NC_003521.1 + 196459 0.68 0.616234
Target:  5'- cGCGCGaaCCUCCGCuggcaCUCGGCCcguUCCGc- -3'
miRNA:   3'- cCGCGC--GGAGGUG-----GAGCCGG---AGGCuc -5'
14620 5' -63.3 NC_003521.1 + 195497 0.66 0.709636
Target:  5'- cGGCGaagaggucguaGCCgucggCCAgCUCGGgCUCCGGc -3'
miRNA:   3'- -CCGCg----------CGGa----GGUgGAGCCgGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 195001 0.66 0.745825
Target:  5'- -aCGCGCUUUCGCCgugccagUGGCCUUCGc- -3'
miRNA:   3'- ccGCGCGGAGGUGGa------GCCGGAGGCuc -5'
14620 5' -63.3 NC_003521.1 + 192110 0.69 0.54188
Target:  5'- --gGCGUCUCCACCUCucccGGCCUCguCGGc -3'
miRNA:   3'- ccgCGCGGAGGUGGAG----CCGGAG--GCUc -5'
14620 5' -63.3 NC_003521.1 + 191238 0.66 0.709636
Target:  5'- cGGUGaCGCCUU--CCUCGGCaCUCguCGGGg -3'
miRNA:   3'- -CCGC-GCGGAGguGGAGCCG-GAG--GCUC- -5'
14620 5' -63.3 NC_003521.1 + 188467 0.66 0.726965
Target:  5'- -aCGCGCCUCCgagcuacgagcagGCCgUgGGCCUggguccgccgCCGAGa -3'
miRNA:   3'- ccGCGCGGAGG-------------UGG-AgCCGGA----------GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 184789 0.69 0.560257
Target:  5'- cGCGCGCCUggaCGCCcuggUGGCCgccUCCGAc -3'
miRNA:   3'- cCGCGCGGAg--GUGGa---GCCGG---AGGCUc -5'
14620 5' -63.3 NC_003521.1 + 184369 0.7 0.479386
Target:  5'- uGGCgcgGCGCCUCUcggACCUgggccacgaggCGGCCUUCGAc -3'
miRNA:   3'- -CCG---CGCGGAGG---UGGA-----------GCCGGAGGCUc -5'
14620 5' -63.3 NC_003521.1 + 184195 0.66 0.745825
Target:  5'- uGGUGCGCUUCUucg-UGGaCCUCUGGGa -3'
miRNA:   3'- -CCGCGCGGAGGuggaGCC-GGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 183722 0.67 0.672559
Target:  5'- cGGCuGCugggGCCUCUACC-CGGCCaUCCu-- -3'
miRNA:   3'- -CCG-CG----CGGAGGUGGaGCCGG-AGGcuc -5'
14620 5' -63.3 NC_003521.1 + 183595 0.66 0.745825
Target:  5'- cGCGagaGCCgCuCGCCUCugagcuacGCCUCCGAGu -3'
miRNA:   3'- cCGCg--CGGaG-GUGGAGc-------CGGAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 181863 0.67 0.681887
Target:  5'- cGGCGCGCUUCUucgcGCCagagGGCCUgguggaguUCGAGg -3'
miRNA:   3'- -CCGCGCGGAGG----UGGag--CCGGA--------GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 181173 0.66 0.700433
Target:  5'- aGGCGCGCCagcgUCUGCCgcaccaacGCCUgCGAGc -3'
miRNA:   3'- -CCGCGCGG----AGGUGGagc-----CGGAgGCUC- -5'
14620 5' -63.3 NC_003521.1 + 181126 0.69 0.550126
Target:  5'- cGGCGCgGCaguugagguagggCUCCACCU-GGCgUCUGAGc -3'
miRNA:   3'- -CCGCG-CG-------------GAGGUGGAgCCGgAGGCUC- -5'
14620 5' -63.3 NC_003521.1 + 180637 0.69 0.532767
Target:  5'- cGGCGCGCguuCUCaCGCCgCGGCUcgcuaCCGGGg -3'
miRNA:   3'- -CCGCGCG---GAG-GUGGaGCCGGa----GGCUC- -5'
14620 5' -63.3 NC_003521.1 + 179532 0.67 0.653826
Target:  5'- gGGCGCGCaaagucgUCC-CgCUCGGCUUCCu-- -3'
miRNA:   3'- -CCGCGCGg------AGGuG-GAGCCGGAGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.