Results 21 - 40 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14620 | 5' | -63.3 | NC_003521.1 | + | 80908 | 0.69 | 0.532767 |
Target: 5'- cGGCgGCGCCUCCucuuCCUCGuuCgCCGAa -3' miRNA: 3'- -CCG-CGCGGAGGu---GGAGCcgGaGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 167 | 0.69 | 0.51471 |
Target: 5'- cGGCuccgGCCgCCGCUUCGGCCUCCc-- -3' miRNA: 3'- -CCGcg--CGGaGGUGGAGCCGGAGGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 153177 | 0.72 | 0.389071 |
Target: 5'- gGGCuGCGCCUCCAgCCUgugcgaGGCCUgCGGc -3' miRNA: 3'- -CCG-CGCGGAGGU-GGAg-----CCGGAgGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 169168 | 0.74 | 0.279191 |
Target: 5'- uGGUGCGCCgcUCCAaCUCGGCCUCgGu- -3' miRNA: 3'- -CCGCGCGG--AGGUgGAGCCGGAGgCuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 206306 | 0.67 | 0.635034 |
Target: 5'- cGCGCGUCUCgGCCcgCGGCCgcuaCCu-- -3' miRNA: 3'- cCGCGCGGAGgUGGa-GCCGGa---GGcuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 206145 | 0.68 | 0.606847 |
Target: 5'- cGCGCaggaggacuGCCUCUACgagcUGGCCUCCGAc -3' miRNA: 3'- cCGCG---------CGGAGGUGga--GCCGGAGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 24681 | 0.7 | 0.478518 |
Target: 5'- uGUGCGCCcagguggccuuccUCUGCCgCGGCCUCCGc- -3' miRNA: 3'- cCGCGCGG-------------AGGUGGaGCCGGAGGCuc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 128373 | 0.76 | 0.214088 |
Target: 5'- gGGCGCGCCcaccagggCCGCCUgGGCCgcCUGAGc -3' miRNA: 3'- -CCGCGCGGa-------GGUGGAgCCGGa-GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 5321 | 0.68 | 0.597475 |
Target: 5'- cGGCGUGCC-CCGCC--GGCCgcgacUCCGGc -3' miRNA: 3'- -CCGCGCGGaGGUGGagCCGG-----AGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 91930 | 0.78 | 0.178286 |
Target: 5'- cGGCGCuCCUCgGCgUCGGCCacggCCGAGg -3' miRNA: 3'- -CCGCGcGGAGgUGgAGCCGGa---GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 184369 | 0.7 | 0.479386 |
Target: 5'- uGGCgcgGCGCCUCUcggACCUgggccacgaggCGGCCUUCGAc -3' miRNA: 3'- -CCG---CGCGGAGG---UGGA-----------GCCGGAGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 181126 | 0.69 | 0.550126 |
Target: 5'- cGGCGCgGCaguugagguagggCUCCACCU-GGCgUCUGAGc -3' miRNA: 3'- -CCGCG-CG-------------GAGGUGGAgCCGgAGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 136368 | 0.71 | 0.418211 |
Target: 5'- aGGaUGCGCugcgacuuccuacaCUCCACCUCGGCCg-CGGGc -3' miRNA: 3'- -CC-GCGCG--------------GAGGUGGAGCCGGagGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 209020 | 0.72 | 0.396815 |
Target: 5'- cGGCGCucaaacGCCUCUA-CUCGGCCUUcugCGAGu -3' miRNA: 3'- -CCGCG------CGGAGGUgGAGCCGGAG---GCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 2355 | 0.73 | 0.323969 |
Target: 5'- gGGcCGCGUCUCCGCC-CcGCCcgCCGAGg -3' miRNA: 3'- -CC-GCGCGGAGGUGGaGcCGGa-GGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 174504 | 0.74 | 0.304149 |
Target: 5'- aGGCG-GCCUCCACggCUUGGaucaCCUCCGGGu -3' miRNA: 3'- -CCGCgCGGAGGUG--GAGCC----GGAGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 206459 | 0.67 | 0.653826 |
Target: 5'- uGGUGCGCaacgCCcaggACCUgGGCCUCaCGGc -3' miRNA: 3'- -CCGCGCGga--GG----UGGAgCCGGAG-GCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 17250 | 0.67 | 0.644434 |
Target: 5'- aGGCGCGCCguaUUCACCUgaauaCGGauuuaUCUCCGGa -3' miRNA: 3'- -CCGCGCGG---AGGUGGA-----GCC-----GGAGGCUc -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 95192 | 0.68 | 0.616234 |
Target: 5'- cGGCGCGgaaCUCCACgCcCGGCa-CCGGGu -3' miRNA: 3'- -CCGCGCg--GAGGUG-GaGCCGgaGGCUC- -5' |
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14620 | 5' | -63.3 | NC_003521.1 | + | 80992 | 0.68 | 0.615295 |
Target: 5'- -uCGCGCCUCCgcgcagcGCCUcaCGGCCggUCCGuGa -3' miRNA: 3'- ccGCGCGGAGG-------UGGA--GCCGG--AGGCuC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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