miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 108624 0.8 0.355908
Target:  5'- -gGCA---CGUugUUGGCCAGGCGGCu -3'
miRNA:   3'- caUGUaaaGCGugAGCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 184020 0.71 0.804254
Target:  5'- -gACucgUUCGCGCgcgacgcCGGUUGGGCGGCc -3'
miRNA:   3'- caUGua-AAGCGUGa------GCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 110676 0.71 0.821374
Target:  5'- -gGCGUa--GCGCUCGGU--GGCGGCa -3'
miRNA:   3'- caUGUAaagCGUGAGCCGguCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 39400 0.66 0.977664
Target:  5'- gGUACAgcugguccugUUgGCACa-GGCCguccagucccguAGGCGGCg -3'
miRNA:   3'- -CAUGUa---------AAgCGUGagCCGG------------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 46398 0.75 0.601212
Target:  5'- gGUGCGUggggCGCGCg-GGCCAGgaaGCGGCg -3'
miRNA:   3'- -CAUGUAaa--GCGUGagCCGGUC---CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 98888 0.75 0.621263
Target:  5'- -gGCGcccaCGCGCUgcaCGGUCAGGCGGCu -3'
miRNA:   3'- caUGUaaa-GCGUGA---GCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 86162 0.74 0.661401
Target:  5'- -aGCGUcUCGCugccggcCUCGGCCA-GCGGCa -3'
miRNA:   3'- caUGUAaAGCGu------GAGCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 124451 0.74 0.671398
Target:  5'- -cACGUcgCGCggcagcagcaGCUCGGCCucgucGGGCGGCu -3'
miRNA:   3'- caUGUAaaGCG----------UGAGCCGG-----UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 126407 0.73 0.710996
Target:  5'- -cACAggUCucggcccuGCGCgauggCGGCCAGGCGGUc -3'
miRNA:   3'- caUGUaaAG--------CGUGa----GCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 123678 0.72 0.786535
Target:  5'- -aGCcgg-CGCGCUgCGGCguGGCGGUg -3'
miRNA:   3'- caUGuaaaGCGUGA-GCCGguCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 106601 0.73 0.740046
Target:  5'- -cGCGggcaGCuACUCGGCCAaGCGGCa -3'
miRNA:   3'- caUGUaaagCG-UGAGCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 91982 0.73 0.710996
Target:  5'- gGUGCAcggcaCGCAcCUCGGCCgaGGGCaGGCg -3'
miRNA:   3'- -CAUGUaaa--GCGU-GAGCCGG--UCCG-CCG- -5'
14621 5' -54.9 NC_003521.1 + 37709 0.78 0.447881
Target:  5'- -cGCAgagUGCcUUUGGCCAGGCGGCg -3'
miRNA:   3'- caUGUaaaGCGuGAGCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 167263 0.72 0.77747
Target:  5'- -aGCGcc-CGCACcaCGGCCAGGUGGUu -3'
miRNA:   3'- caUGUaaaGCGUGa-GCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 197866 0.78 0.447881
Target:  5'- -gGCGggUCGCGCUCgcugGGCugCAGGCGGCa -3'
miRNA:   3'- caUGUaaAGCGUGAG----CCG--GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 14435 0.73 0.691292
Target:  5'- -gACGUggUGCACaCGGCCcugcGGCGGCg -3'
miRNA:   3'- caUGUAaaGCGUGaGCCGGu---CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 201387 0.72 0.77747
Target:  5'- -gGCGc--CGgGCUCGGCCGGcaGCGGCa -3'
miRNA:   3'- caUGUaaaGCgUGAGCCGGUC--CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 177184 0.71 0.812036
Target:  5'- -cACGgggUUGCGCgugCGGuacuucuCCAGGCGGCg -3'
miRNA:   3'- caUGUaa-AGCGUGa--GCC-------GGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 180200 0.77 0.512793
Target:  5'- gGUACAgguacUCGCGCUCGGCguuGGUGGUg -3'
miRNA:   3'- -CAUGUaa---AGCGUGAGCCGgu-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 204630 0.75 0.621263
Target:  5'- -aGCGUUUgaGcCGCUCGGCCAGGUgcgugGGCa -3'
miRNA:   3'- caUGUAAAg-C-GUGAGCCGGUCCG-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.