Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14622 | 5' | -54 | NC_003521.1 | + | 72637 | 0.66 | 0.977983 |
Target: 5'- cGUGC-UGGCGgGcCAGCAGCuc-AUCa -3' miRNA: 3'- -CACGaACCGCgU-GUCGUCGucuUAGa -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 228982 | 0.66 | 0.977983 |
Target: 5'- gGUGCgcgggcGGCGCAggacCGGCAGCAcGGAgCUa -3' miRNA: 3'- -CACGaa----CCGCGU----GUCGUCGU-CUUaGA- -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 121217 | 0.66 | 0.977983 |
Target: 5'- -cGCgcagGGCGCGCAGCucCAGGAa-- -3' miRNA: 3'- caCGaa--CCGCGUGUCGucGUCUUaga -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 103497 | 0.66 | 0.975533 |
Target: 5'- -cGCUggcgaaagGGCGagccCAGCAGCAGGcgCg -3' miRNA: 3'- caCGAa-------CCGCgu--GUCGUCGUCUuaGa -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 119593 | 0.66 | 0.975533 |
Target: 5'- -cGCUgGGCG-GCGGguGCAGcGUCUc -3' miRNA: 3'- caCGAaCCGCgUGUCguCGUCuUAGA- -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 31289 | 0.66 | 0.972889 |
Target: 5'- -cGCcgGGCGCauaaccGCGGCAGCGGcgacGGUCa -3' miRNA: 3'- caCGaaCCGCG------UGUCGUCGUC----UUAGa -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 36979 | 0.66 | 0.972889 |
Target: 5'- gGUGCUcGGCGgcgacaucCGCGacgagggcgucGCGGCGGAGUCa -3' miRNA: 3'- -CACGAaCCGC--------GUGU-----------CGUCGUCUUAGa -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 167735 | 0.66 | 0.972889 |
Target: 5'- uUGCgUGGCGCuGCGGUGGCcggcggagcugAGggUCa -3' miRNA: 3'- cACGaACCGCG-UGUCGUCG-----------UCuuAGa -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 190533 | 0.66 | 0.972889 |
Target: 5'- -aGCgaGGUGCgGCGGCAGCAGcggCg -3' miRNA: 3'- caCGaaCCGCG-UGUCGUCGUCuuaGa -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 214562 | 0.66 | 0.970045 |
Target: 5'- gGUGCcUGGgGUGCAGCAGCGc----- -3' miRNA: 3'- -CACGaACCgCGUGUCGUCGUcuuaga -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 175442 | 0.66 | 0.970045 |
Target: 5'- cGUGCUcGGCGUACgaucGGCGGCGcgccGUCUc -3' miRNA: 3'- -CACGAaCCGCGUG----UCGUCGUcu--UAGA- -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 127817 | 0.66 | 0.970045 |
Target: 5'- cUGCcaGGCGCGCAGCucGUGGAAg-- -3' miRNA: 3'- cACGaaCCGCGUGUCGu-CGUCUUaga -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 141891 | 0.66 | 0.970045 |
Target: 5'- aGUGUgauGCGCACGGCcgugcgcgAGCAGAcgCa -3' miRNA: 3'- -CACGaacCGCGUGUCG--------UCGUCUuaGa -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 138034 | 0.66 | 0.970045 |
Target: 5'- -cGCUgccGGCGCACGG-GGCuguGggUCg -3' miRNA: 3'- caCGAa--CCGCGUGUCgUCGu--CuuAGa -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 7446 | 0.66 | 0.970045 |
Target: 5'- -cGC--GGCGCACAGCAccacGCGGGAc-- -3' miRNA: 3'- caCGaaCCGCGUGUCGU----CGUCUUaga -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 193153 | 0.66 | 0.970045 |
Target: 5'- cGUGUcgucGGCGCACAGCaucucaggagccGGCGGGAg-- -3' miRNA: 3'- -CACGaa--CCGCGUGUCG------------UCGUCUUaga -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 99294 | 0.66 | 0.970045 |
Target: 5'- -gGCUguagagGGCGCAgAGCAGgCAG-GUCc -3' miRNA: 3'- caCGAa-----CCGCGUgUCGUC-GUCuUAGa -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 168273 | 0.66 | 0.966994 |
Target: 5'- -cGCUgaucUGGaucuGCACGGCcGUAGAGUCg -3' miRNA: 3'- caCGA----ACCg---CGUGUCGuCGUCUUAGa -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 26874 | 0.66 | 0.966994 |
Target: 5'- -aGCUcuccuugaUGGCGCGgAGCAGguGAccgccGUCc -3' miRNA: 3'- caCGA--------ACCGCGUgUCGUCguCU-----UAGa -5' |
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14622 | 5' | -54 | NC_003521.1 | + | 74891 | 0.66 | 0.966993 |
Target: 5'- -cGCUgcuGCGCgagacggugGCGGCGGUGGAGUCg -3' miRNA: 3'- caCGAac-CGCG---------UGUCGUCGUCUUAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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