miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14622 5' -54 NC_003521.1 + 72637 0.66 0.977983
Target:  5'- cGUGC-UGGCGgGcCAGCAGCuc-AUCa -3'
miRNA:   3'- -CACGaACCGCgU-GUCGUCGucuUAGa -5'
14622 5' -54 NC_003521.1 + 228982 0.66 0.977983
Target:  5'- gGUGCgcgggcGGCGCAggacCGGCAGCAcGGAgCUa -3'
miRNA:   3'- -CACGaa----CCGCGU----GUCGUCGU-CUUaGA- -5'
14622 5' -54 NC_003521.1 + 121217 0.66 0.977983
Target:  5'- -cGCgcagGGCGCGCAGCucCAGGAa-- -3'
miRNA:   3'- caCGaa--CCGCGUGUCGucGUCUUaga -5'
14622 5' -54 NC_003521.1 + 119593 0.66 0.975533
Target:  5'- -cGCUgGGCG-GCGGguGCAGcGUCUc -3'
miRNA:   3'- caCGAaCCGCgUGUCguCGUCuUAGA- -5'
14622 5' -54 NC_003521.1 + 103497 0.66 0.975533
Target:  5'- -cGCUggcgaaagGGCGagccCAGCAGCAGGcgCg -3'
miRNA:   3'- caCGAa-------CCGCgu--GUCGUCGUCUuaGa -5'
14622 5' -54 NC_003521.1 + 31289 0.66 0.972889
Target:  5'- -cGCcgGGCGCauaaccGCGGCAGCGGcgacGGUCa -3'
miRNA:   3'- caCGaaCCGCG------UGUCGUCGUC----UUAGa -5'
14622 5' -54 NC_003521.1 + 167735 0.66 0.972889
Target:  5'- uUGCgUGGCGCuGCGGUGGCcggcggagcugAGggUCa -3'
miRNA:   3'- cACGaACCGCG-UGUCGUCG-----------UCuuAGa -5'
14622 5' -54 NC_003521.1 + 190533 0.66 0.972889
Target:  5'- -aGCgaGGUGCgGCGGCAGCAGcggCg -3'
miRNA:   3'- caCGaaCCGCG-UGUCGUCGUCuuaGa -5'
14622 5' -54 NC_003521.1 + 36979 0.66 0.972889
Target:  5'- gGUGCUcGGCGgcgacaucCGCGacgagggcgucGCGGCGGAGUCa -3'
miRNA:   3'- -CACGAaCCGC--------GUGU-----------CGUCGUCUUAGa -5'
14622 5' -54 NC_003521.1 + 99294 0.66 0.970045
Target:  5'- -gGCUguagagGGCGCAgAGCAGgCAG-GUCc -3'
miRNA:   3'- caCGAa-----CCGCGUgUCGUC-GUCuUAGa -5'
14622 5' -54 NC_003521.1 + 214562 0.66 0.970045
Target:  5'- gGUGCcUGGgGUGCAGCAGCGc----- -3'
miRNA:   3'- -CACGaACCgCGUGUCGUCGUcuuaga -5'
14622 5' -54 NC_003521.1 + 175442 0.66 0.970045
Target:  5'- cGUGCUcGGCGUACgaucGGCGGCGcgccGUCUc -3'
miRNA:   3'- -CACGAaCCGCGUG----UCGUCGUcu--UAGA- -5'
14622 5' -54 NC_003521.1 + 127817 0.66 0.970045
Target:  5'- cUGCcaGGCGCGCAGCucGUGGAAg-- -3'
miRNA:   3'- cACGaaCCGCGUGUCGu-CGUCUUaga -5'
14622 5' -54 NC_003521.1 + 141891 0.66 0.970045
Target:  5'- aGUGUgauGCGCACGGCcgugcgcgAGCAGAcgCa -3'
miRNA:   3'- -CACGaacCGCGUGUCG--------UCGUCUuaGa -5'
14622 5' -54 NC_003521.1 + 138034 0.66 0.970045
Target:  5'- -cGCUgccGGCGCACGG-GGCuguGggUCg -3'
miRNA:   3'- caCGAa--CCGCGUGUCgUCGu--CuuAGa -5'
14622 5' -54 NC_003521.1 + 7446 0.66 0.970045
Target:  5'- -cGC--GGCGCACAGCAccacGCGGGAc-- -3'
miRNA:   3'- caCGaaCCGCGUGUCGU----CGUCUUaga -5'
14622 5' -54 NC_003521.1 + 193153 0.66 0.970045
Target:  5'- cGUGUcgucGGCGCACAGCaucucaggagccGGCGGGAg-- -3'
miRNA:   3'- -CACGaa--CCGCGUGUCG------------UCGUCUUaga -5'
14622 5' -54 NC_003521.1 + 168273 0.66 0.966994
Target:  5'- -cGCUgaucUGGaucuGCACGGCcGUAGAGUCg -3'
miRNA:   3'- caCGA----ACCg---CGUGUCGuCGUCUUAGa -5'
14622 5' -54 NC_003521.1 + 26874 0.66 0.966994
Target:  5'- -aGCUcuccuugaUGGCGCGgAGCAGguGAccgccGUCc -3'
miRNA:   3'- caCGA--------ACCGCGUgUCGUCguCU-----UAGa -5'
14622 5' -54 NC_003521.1 + 74891 0.66 0.966993
Target:  5'- -cGCUgcuGCGCgagacggugGCGGCGGUGGAGUCg -3'
miRNA:   3'- caCGAac-CGCG---------UGUCGUCGUCUUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.